PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P03880_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 285aa    MW: 31152.2 Da    PI: 9.1821
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P03880_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.32.9e-4065140176
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                            +CqvegC++dl+ ak yh rhkvC vhsk+p+vlv+g+eqrfCqqCsrfh+l efD++krsCrrrLa hnerrr++
  GSMUA_Achr4P03880_001  65 RCQVEGCSVDLTGAKAYHCRHKVCGVHSKSPKVLVAGMEQRFCQQCSRFHQLPEFDQGKRSCRRRLACHNERRRRR 140
                            6************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.4E-3458127IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.1263140IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.53E-3864144IPR004333Transcription factor, SBP-box
PfamPF031102.6E-3066139IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MNPNCSNVAS SACGSSDSTQ GLKIGRKTYF EDFSVSSSSF PVALSAPQKK GKGVAQVGKQ  60
QQPPRCQVEG CSVDLTGAKA YHCRHKVCGV HSKSPKVLVA GMEQRFCQQC SRFHQLPEFD  120
QGKRSCRRRL ACHNERRRRR PLSAHVACMP SVFHAEGNNR FRGFLVDFTH PKLPSFLQNA  180
WQINQSGLGV ASAPGIPHLT AGSDSSRALS LLSAQPWGST LVADYMTSSR GCSTSFEVRL  240
NQVGEPDDGH FAGEIELVPQ GKRQCMGVDP SVRCRFSDDA IHWTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-29661391184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128139RLACHNERRRRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018680190.10.0PREDICTED: squamosa promoter-binding-like protein 17 isoform X1
SwissprotA3C0579e-52SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLM0SKV50.0M0SKV5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P03880_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.15e-39squamosa promoter binding protein-like 9