PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P03660_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 270aa    MW: 29748.8 Da    PI: 10.0707
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P03660_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.21.3e-31203261259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++ +tYegeHnh 
  GSMUA_Achr4P03660_001 203 ADDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCVEDPTMLMVTYEGEHNHA 261
                            69************************9988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.3E-19155200IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.8E-34190262IPR003657WRKY domain
PROSITE profilePS5081129.918197260IPR003657WRKY domain
SuperFamilySSF1182904.71E-27200261IPR003657WRKY domain
SMARTSM007742.7E-38202262IPR003657WRKY domain
PfamPF031065.7E-27204260IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEGVEEANRA AVESCYRVLS LLSETQDRAL AYKDLMADTG KAVSRFNKVI SMLSNGVGHA  60
RPRRLHDPQQ LHFNHGIFLD SPAVSRADQS PLAMCGRSNS GMNLKFDNSS CAATVSSSRS  120
FLSSLSMDGS MDGKAFNLIG GSQSSNPMNW QLHNRRRCTG GGEDGNGKCA RTGRCHCSKK  180
RKLRVKRTIK VPAISNKLAD IPADDYSWRK YGQKPIKGSP HPRGYYKCSS MRGCPARKHV  240
ERCVEDPTML MVTYEGEHNH AKLATQSAHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-21195260771WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394715.11e-123PREDICTED: protein WRKY1-like
SwissprotQ93WU64e-86WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLM0SKT30.0M0SKT3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P03660_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.11e-76WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]