PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr4P03660_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 270aa MW: 29748.8 Da PI: 10.0707 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.2 | 1.3e-31 | 203 | 261 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++ +tYegeHnh GSMUA_Achr4P03660_001 203 ADDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCVEDPTMLMVTYEGEHNHA 261 69************************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.3E-19 | 155 | 200 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 5.8E-34 | 190 | 262 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.918 | 197 | 260 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.71E-27 | 200 | 261 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-38 | 202 | 262 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.7E-27 | 204 | 260 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 270 aa Download sequence Send to blast |
MEGVEEANRA AVESCYRVLS LLSETQDRAL AYKDLMADTG KAVSRFNKVI SMLSNGVGHA 60 RPRRLHDPQQ LHFNHGIFLD SPAVSRADQS PLAMCGRSNS GMNLKFDNSS CAATVSSSRS 120 FLSSLSMDGS MDGKAFNLIG GSQSSNPMNW QLHNRRRCTG GGEDGNGKCA RTGRCHCSKK 180 RKLRVKRTIK VPAISNKLAD IPADDYSWRK YGQKPIKGSP HPRGYYKCSS MRGCPARKHV 240 ERCVEDPTML MVTYEGEHNH AKLATQSAHT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-21 | 195 | 260 | 7 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009394715.1 | 1e-123 | PREDICTED: protein WRKY1-like | ||||
Swissprot | Q93WU6 | 4e-86 | WRK74_ARATH; Probable WRKY transcription factor 74 | ||||
TrEMBL | M0SKT3 | 0.0 | M0SKT3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P03660_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2859 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G28650.1 | 1e-76 | WRKY DNA-binding protein 74 |
Publications ? help Back to Top | |||
---|---|---|---|
|