PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P03600_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NF-YA
Protein Properties Length: 298aa    MW: 32461.3 Da    PI: 6.8636
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P03600_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.77.2e-32160216158
              CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                            +ep+YVNaKQy++Il+RRq+Rak+e ek++ +k rkpylheSRh hAlrR+Rg+gGrF
  GSMUA_Achr4P03600_001 160 EEPVYVNAKQYHGILRRRQSRAKAELEKNV-IKVRKPYLHESRHLHALRRARGCGGRF 216
                            69***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.5E-36158219IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.462159219IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.3E-27161216IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.0E-23162184IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860164184IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.0E-23193216IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MESYPGGTNT NTADPSVQTA LPATIDGQPW WCGPVFAAVG TSKSPSVGNE AGQSQPSDGV  60
DDTGDASKER QNMGTRADGG LGEQRQNLLP TSSAMTSVMP EILSQHAELE LGQSIACATY  120
PFTDPYFAGV VASYGTQALM HPQLLRIPYS RMPLPLEMTE EPVYVNAKQY HGILRRRQSR  180
AKAELEKNVI KVRKPYLHES RHLHALRRAR GCGGRFLNTK KTDGATKTET QQGSTPNSPL  240
PTQSVGSSTS LTSDCSDNAN PSSPMHETSR CESLNLIELI QKEGLYLLWY REDVGFCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-19160223265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018679885.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like
TrEMBLM0SKS70.0M0SKS7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P03600_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.41e-44nuclear factor Y, subunit A1