PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P02800_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 329aa    MW: 36240.5 Da    PI: 8.3518
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P02800_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.65.4e-33192249259
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dpk+v++tYeg+H+h+
  GSMUA_Achr4P02800_001 192 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSYQDPKIVVTTYEGKHTHQ 249
                            8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-34176251IPR003657WRKY domain
SuperFamilySSF1182903.27E-29183251IPR003657WRKY domain
PROSITE profilePS5081132.501186251IPR003657WRKY domain
SMARTSM007741.1E-38191250IPR003657WRKY domain
PfamPF031068.5E-26192249IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MPGDHEEADR YHIPFHDELS SLFPQKPAGG DANGTGSLGF DQQAESPLVN FTDAFRGSNM  60
DYGVIARALG LSCPAPSKFL RSSGTASREL MVDVGNGRKS LVPSLGCSLG ATPMTPNSSI  120
SSSSTEAAGE EAAERCKKDE KKQGEEQKKQ AKGDEEGGDK PKTLSTAKKK AEKRQREPAF  180
AFVTKSEVDH LEDGYRWRKY GQKAVKNSPY PRSYYRCTTQ KCPVKKRVER SYQDPKIVVT  240
TYEGKHTHQS PAAVRGSTHL VAPPTTMPVS FYHDLMMHQV PQLSNTCQQG NTNPNMYLAN  300
LPPALQQHQF PEYGLLQDVL FSFDHGSQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-291842521078Probable WRKY transcription factor 4
2lex_A8e-291842521078Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394816.10.0PREDICTED: probable WRKY transcription factor 71
TrEMBLM0SKJ70.0M0SKJ7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P02800_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.13e-47WRKY DNA-binding protein 28