PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P02730_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 288aa    MW: 31940.2 Da    PI: 9.1508
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P02730_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.66.2e-33632031128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 
                            lp+G++F+Ptd+el+ e+L+ k+  ++      ++++   i+   +i++++P++Lp  v+ +    +fF++ +k+y+tg+rk+r+++ 
  GSMUA_Achr4P02730_001  63 LPAGVKFDPTDQELL-EHLEGKAMPESekfhplIDEFIPtIEGEsGICYTHPEKLP-GVRRDGLVRHFFHRPSKAYTTGTRKRRKVHt 148
                            799************.99**99988885665443332333655558**********.566666788******************7444 PP

                    NAM  80 .....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                 + +W++tgk+++v++ +g+l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  GSMUA_Achr4P02730_001 149 dehggETRWHKTGKTRPVFV-GGSLKGYKKILVLYtnYGNQRKPEKTNWVMHQYHL 203
                            56655778************.99************6557999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-3856222IPR003441NAC domain
PROSITE profilePS5100532.97463222IPR003441NAC domain
PfamPF023655.6E-1564203IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MAWCSSCGND RMFDRNLASS VALVGVGKRL KANSIKACPS CGHRIELVES EKPPSAIQDL  60
PGLPAGVKFD PTDQELLEHL EGKAMPESEK FHPLIDEFIP TIEGESGICY THPEKLPGVR  120
RDGLVRHFFH RPSKAYTTGT RKRRKVHTDE HGGETRWHKT GKTRPVFVGG SLKGYKKILV  180
LYTNYGNQRK PEKTNWVMHQ YHLGSDEEEK EGELVVSKVF YQTQPRQCGL GAKDAVQTRL  240
NGYGGGGNAI LKDGSISNYC SSSLISYDQT RNSQAKFAMQ ATGASFLP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394825.10.0PREDICTED: NAC domain-containing protein 73-like
SwissprotO494591e-115NAC73_ARATH; NAC domain-containing protein 73
TrEMBLM0SKJ00.0M0SKJ0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P02730_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-117NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]