PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P02390_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 264aa MW: 30282 Da PI: 8.2762 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.2 | 2.7e-52 | 13 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeelvv+yL++k++ + ++ +i+e+d+yk+ePw+Lp k+ +++ewyfF++rd+ky++g+r+nra+ +gyWkatg GSMUA_Achr4P02390_001 13 LPPGFRFHPTDEELVVHYLCRKTACQCQPV-PIIAEIDLYKYEPWELPDKALFGNREWYFFTPRDRKYPNGSRPNRAAGKGYWKATGA 99 79**********************999999.88***************7777899********************************* PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk++ k ++++vg+kk Lvfy+g+apkg+ktdW+mheyrl GSMUA_Achr4P02390_001 100 DKPISPKgSNRTVGIKKALVFYSGKAPKGVKTDWIMHEYRL 140 *****9867788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-62 | 9 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.999 | 13 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-27 | 14 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MGRTRDAEAE LNLPPGFRFH PTDEELVVHY LCRKTACQCQ PVPIIAEIDL YKYEPWELPD 60 KALFGNREWY FFTPRDRKYP NGSRPNRAAG KGYWKATGAD KPISPKGSNR TVGIKKALVF 120 YSGKAPKGVK TDWIMHEYRL ADVNRSANKG SLRLDNWVLC RLYNKKNTWE KTKMQKQEET 180 SFGETMQSVD DALSDSFRTP ESDVENEVVL PDFDDLGYLS QASTGSSYTN FGSTPISDAT 240 NQDYYFQSFV SPLLRPNHTN MRQF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-96 | 1 | 171 | 3 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009394855.1 | 0.0 | PREDICTED: NAC domain-containing protein 68-like | ||||
Swissprot | Q52QH4 | 1e-112 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | M0SKF6 | 0.0 | M0SKF6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P02390_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5389 | 37 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08790.1 | 9e-90 | NAC family protein |