PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P02380_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 334aa MW: 37313.9 Da PI: 8.3288 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.2 | 1.5e-53 | 8 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeel+ +yL++++++ ++++ ++i+evdiyk++PwdLp+k++ +++ewyfFs+rd+ky++g r+nra++sgyWkatg+ GSMUA_Achr4P02380_001 8 LPPGFRFHPTDEELILHYLRNRAAAVPCPV-SIIAEVDIYKFDPWDLPAKATFGDREWYFFSPRDRKYPNGVRPNRAAASGYWKATGT 94 79****************************.89***************988899********************************** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+v+++ ++e +g+kk Lvfy+gr p+g+ktdW+mheyrl GSMUA_Achr4P02380_001 95 DKPVMASkGSESIGVKKALVFYQGRPPRGVKTDWIMHEYRL 135 *****9867788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-65 | 5 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 62.321 | 8 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-27 | 9 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MTNPAVSLPP GFRFHPTDEE LILHYLRNRA AAVPCPVSII AEVDIYKFDP WDLPAKATFG 60 DREWYFFSPR DRKYPNGVRP NRAAASGYWK ATGTDKPVMA SKGSESIGVK KALVFYQGRP 120 PRGVKTDWIM HEYRLADAHN KNSYRPIKLR DCSMRLDDWV LCRIYKKSHH QPSMDAEKDD 180 SGVEDVAMPT PPSATQQHDT AKLPKSYSLS ELLDAADFSA LSRLLERPAD VLGLISENSS 240 IAHPFSHQGF DGNSDGLAVH HLFQAESPAP MTDSNPKRRW TANGCFEDGS EVSHTGKRAT 300 GSRTATSVAN KFNFTAQQPF VDQQLMSNPH LSLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-72 | 6 | 170 | 13 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009394856.1 | 0.0 | PREDICTED: NAC transcription factor 56-like | ||||
Swissprot | K4BNG7 | 3e-91 | NAP2_SOLLC; NAC domain-containing protein 2 | ||||
TrEMBL | M0SKF5 | 0.0 | M0SKF5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P02380_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 3e-90 | NAC domain containing protein 47 |
Publications ? help Back to Top | |||
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