PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P01430_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family YABBY
Protein Properties Length: 173aa    MW: 19180.3 Da    PI: 8.8608
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P01430_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY56.11.6e-17146146
                  YABBY  1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsll 46
                           +d++s +e++Cyv+C++Cnt+lav vP + l+ +vtv+CGhC +l 
  GSMUA_Achr4P01430_001  1 MDLVSPTEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNHLS 46
                           578999************************************9874 PP
2YABBY92.98.1e-2984144102162
                  YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                            s+++++ ++++  v++PPek+ r+Psaynrf+keeiqrika+ Pdi hreafs+aaknWa 
  GSMUA_Achr4P01430_001  84 SSSSEQMIQKPTYVVKPPEKKHRMPSAYNRFMKEEIQRIKAAKPDIPHREAFSMAAKNWAK 144
                            4556677777777**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.6E-466145IPR006780YABBY protein
SuperFamilySSF470952.23E-893146IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.0E-598146IPR009071High mobility group box domain
CDDcd013901.03E-599147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MDLVSPTEHL CYVRCTYCNT VLAVGVPCKR LMDTVTVKCG HCNHLSFLSP RPLVQSPSPT  60
DYEMGLQGPC TECLRGQPLP PPPSSSSEQM IQKPTYVVKP PEKKHRMPSA YNRFMKEEIQ  120
RIKAAKPDIP HREAFSMAAK NWAKCDPRCS TIASISGNSK LPSVPQVVTP ITN
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395243.11e-122PREDICTED: protein DROOPING LEAF-like
SwissprotQ76EJ02e-82YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLM0SK601e-125M0SK60_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P01430_0011e-126(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59513657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.13e-50YABBY family protein