PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P00620_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB_related

Protein Properties

Length: 484aa MW: 54467.6 Da PI: 4.2116

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P00620_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.6	1.9e-10	249	297	2	47
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++++v + + Wk+ ++ ++ +R+ k+++s+++++ GSMUA_Achr4P00620_001 249 EKWTEEEEQLFYEVVLLNPASlgknFWKKLPQVFP-TRSSKELISYYFNV 297 69***********8766556666******.*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-5	246	303	IPR009057	Homeodomain-like
SMART	SM00717	2.6E-5	247	300	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.05E-6	247	298	IPR009057	Homeodomain-like
Pfam	PF00249	4.0E-9	249	297	IPR001005	SANT/Myb domain
CDD	cd00167	3.55E-9	250	298	No hit	No description
PROSITE profile	PS50090	6.33	250	298	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MDIWIDNGKR SLCDGETCEH GSKRLKQADQ NLQLCSSKIC ISAFEESPSV ASEDRKYRGT 60 AAVAGDIVNQ ATSSNWFSRE SALDSPIRIP SYPSYYGDTC QATESDQVED RYSPVFDYHG 120 RKHVPIGANH QADLPEWGSQ DFKNHIRDND VCASPMTPVT TSLSCDNVVI DGDDGDKWVG 180 TCVIPMPDSA VLASDVLAYH KMECSCLDVG SIRCVRQHVM QARQKLKQKL GHKTFLELGF 240 GNMGEVVTEK WTEEEEQLFY EVVLLNPASL GKNFWKKLPQ VFPTRSSKEL ISYYFNVFML 300 RKRAEQNRLD PLHVDSDDDE WQESDDGESS TEEEDSVVES PPADQDVAGE EDDLEEAEIA 360 EEDDDVEDCV YYHLAGYNEK QPSGDINRHI DDSCTSYEGQ HNGVVSCDAV DISDLHHGLI 420 EDHENLHNEH RNDGLSGLAD YGFFDGHSDL KSWDMRYSCG TEKDDFFSTC NVIEEVFGKE 480 PLDK

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MDIWIDNGKR SLCDGETCEH GSKRLKQADQ NLQLCSSKIC ISAFEESPSV ASEDRKYRGT  60
AAVAGDIVNQ ATSSNWFSRE SALDSPIRIP SYPSYYGDTC QATESDQVED RYSPVFDYHG  120
RKHVPIGANH QADLPEWGSQ DFKNHIRDND VCASPMTPVT TSLSCDNVVI DGDDGDKWVG  180
TCVIPMPDSA VLASDVLAYH KMECSCLDVG SIRCVRQHVM QARQKLKQKL GHKTFLELGF  240
GNMGEVVTEK WTEEEEQLFY EVVLLNPASL GKNFWKKLPQ VFPTRSSKEL ISYYFNVFML  300
RKRAEQNRLD PLHVDSDDDE WQESDDGESS TEEEDSVVES PPADQDVAGE EDDLEEAEIA  360
EEDDDVEDCV YYHLAGYNEK QPSGDINRHI DDSCTSYEGQ HNGVVSCDAV DISDLHHGLI  420
EDHENLHNEH RNDGLSGLAD YGFFDGHSDL KSWDMRYSCG TEKDDFFSTC NVIEEVFGKE  480
PLDK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009395107.1	0.0	PREDICTED: uncharacterized protein LOC103980420 isoform X2
Refseq	XP_009395108.1	0.0	PREDICTED: uncharacterized protein LOC103980420 isoform X2
Refseq	XP_009395109.1	0.0	PREDICTED: uncharacterized protein LOC103980420 isoform X2
Refseq	XP_009395111.1	0.0	PREDICTED: uncharacterized protein LOC103980420 isoform X2
Refseq	XP_018680868.1	0.0	PREDICTED: uncharacterized protein LOC103980420 isoform X2
TrEMBL	M0SJX9	0.0	M0SJX9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P00620_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11684	4	6