PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P00270_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NF-YC | ||||||||
Protein Properties | Length: 265aa MW: 29131.7 Da PI: 5.9118 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 55.8 | 1e-17 | 6 | 85 | 18 | 97 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 ++++P +rikki+++ded+ +i+ +Pvl+ska elf+ +l +++ + + +t+ ++++v + ++fdfl d v GSMUA_Achr4P00270_001 6 HTRFPATRIKKIMQSDEDIGKIALAVPVLVSKALELFLQDLCGKTYSMTLHRGVKTMSSFPLKQCVHKFTVFDFLKDLVS 85 678**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.1E-22 | 4 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 9.14E-18 | 4 | 86 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.6E-15 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MRRKLHTRFP ATRIKKIMQS DEDIGKIALA VPVLVSKALE LFLQDLCGKT YSMTLHRGVK 60 TMSSFPLKQC VHKFTVFDFL KDLVSNVPDV GGSDADPDDK ASKKRFSDVD IQLVFHQEAC 120 RSSSSSSGSR SRRGQGRRCR GKGRGSLVVD GVEKGSVDFN IYEDDPGTQH DDELTHSETD 180 RDMATASEEN CVTSSSVRAT VGNFDLNLDF NDIEEIAPAS ATTAAAMATI FKVNGDLTDD 240 YLGSSISNMD KITIDPVQFA LLHRD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 7e-21 | 2 | 72 | 5 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009395263.2 | 1e-148 | PREDICTED: DNA polymerase epsilon subunit C-like | ||||
TrEMBL | M0SJU4 | 0.0 | M0SJU4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P00270_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2172 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19490.1 | 1e-43 | NF-YC family protein |