PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P31860_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HSF

Protein Properties

Length: 324aa MW: 36588.5 Da PI: 6.1827

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P31860_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	105.4	4.8e-33	19	110	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 F++k+y +++d+++++li w +++nsf+vl ++ef++ +Lp yF+hsnf+SFvRQLn+YgF+kv+ ++ weF+h+sF ++ GSMUA_Achr3P31860_001 19 FVEKTYAMVNDPRTDSLILWGKKNNSFLVLSPNEFSQFLLPYYFRHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHQSFLRD 97 9**************************************************************999.........******* PP XXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkks 102 + +ll +i r+++ GSMUA_Achr3P31860_001 98 QIHLLPRIIRRTK 110 ******99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.6E-35	13	102	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.9E-47	15	108	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.13E-32	16	108	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	5.2E-17	19	42	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.5E-28	19	108	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.2E-17	57	69	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.2E-17	70	82	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006970	Biological Process	response to osmotic stress
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MEGTSKDSIG YEAQAAAPFV EKTYAMVNDP RTDSLILWGK KNNSFLVLSP NEFSQFLLPY 60 YFRHSNFSSF VRQLNTYGFR KVDPDRWEFA HQSFLRDQIH LLPRIIRRTK RAHAGLFACS 120 SSSSSSSEKE KGAMEGEVDE MLLQELFRLR QEQRALEEEL QVMSKRLKAT ERRPHQMMSF 180 LAKMADDPRS LSRLVISKQQ QQQQQSSTAA KKRRLIISPP PPPPAAATQL DDGLFLPSIL 240 VPGIQQTMFE PLDHGSDQLI MEEVKPFALI TDVSAINSYD AELIGPNSAS EISFLPEFEL 300 SMTGSETAAA EANFPFSLLG HGFY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-21	15	109	20	130	Heat shock factor protein 1
5d5v_B	1e-21	15	109	20	130	Heat shock factor protein 1
5d5v_D	1e-21	15	109	20	130	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009394157.1	0.0	PREDICTED: heat stress transcription factor C-1b-like
Swissprot	Q6VBA4	9e-69	HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBL	M0SJK0	0.0	M0SJK0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P31860_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11298	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	9e-54	heat shock transcription factor C1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]