PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P31550_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CPP
Protein Properties Length: 585aa    MW: 63893.3 Da    PI: 8.2337
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P31550_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.46.7e-1495133342
                    TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                            +k+CnCk+s+Clk+YCeCfa+g++C+  C+C++C+N+ e+
  GSMUA_Achr3P31550_001  95 TKNCNCKHSRCLKLYCECFASGVYCDG-CNCTNCCNNVEN 133
                            699************************.********9875 PP
2TCR513e-16207246140
                    TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                            k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN e
  GSMUA_Achr3P31550_001 207 KHNKGCHCKKSGCLKKYCECFQANILCSDNCKCMDCKNFE 246
                            589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575119No hitNo description
SMARTSM011142.8E-1293133IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.16394247IPR005172CRC domain
PfamPF036387.1E-1096130IPR005172CRC domain
SMARTSM011145.0E-20207248IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.5E-13210245IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MEQGNRSAST ASGYTSGSCH RGPRATATAA AAPAATADAG AASASGLSPL NSVAHVSSYL  60
TVILSNLPFV CSSEQESLKK RLRPMYETKD GTPRTKNCNC KHSRCLKLYC ECFASGVYCD  120
GCNCTNCCNN VENEAARHDA VEATLERNPN AFRPKIGSSP HATRDIRPKN RMITLSRKSA  180
FKFIQQLNVY FLIQNRRDEV GELLVGKHNK GCHCKKSGCL KKYCECFQAN ILCSDNCKCM  240
DCKNFEGSEE RKALFHSNHG STLYMQQANA AIKGAIGPSG FISPSSKRRR HQSLVVGNSL  300
KDRSIHRLAQ LPQANHPKTL IPSSSSFASD IVTDAVGPTP VVPAKVTYRS LLADVVQLEH  360
VRDLCKLLVV VSGHVAKTFQ DREAQEKVVK KDDQVETCLA SPIHDGELRQ IDPNSQLASA  420
GDVSNGISAH KMDAEVHKSD CEDEHKAQRP MSPGTLALMC DEQDTMFMTS QHASTTLTYR  480
CDQNISEVCA EQERCVLMEF RDYLRKIVTH GRMKEERYAS MAGKSGTSGF QRLAMTSAAG  540
APTVAAEPPE TPKPVIANSN NHQPVRWPIT SDGDTKPVVV EHSEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-289325610132Protein lin-54 homolog
5fd3_B9e-289325610132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4848885e-37AM484888.2 Vitis vinifera contig VV78X063253.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394187.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD11e-134TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLM0SJG90.0M0SJG9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P31550_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-128Tesmin/TSO1-like CXC domain-containing protein