PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P31310_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

WRKY

Protein Properties

Length: 229aa MW: 25718.9 Da PI: 10.0778

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P31310_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	107.1	8.9e-34	96	154	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers edp++v++tYeg+H+h+ GSMUA_Achr3P31310_001 96 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCPVKKRVERSYEDPTIVVTTYEGKHTHQ 154 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.2E-35	81	156	IPR003657	WRKY domain
SuperFamily	SSF118290	6.93E-30	88	156	IPR003657	WRKY domain
PROSITE profile	PS50811	31.846	91	156	IPR003657	WRKY domain
SMART	SM00774	4.4E-39	96	155	IPR003657	WRKY domain
Pfam	PF03106	2.5E-26	97	154	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MKRCVGNLLQ DSIMKFLTST SWCGGGTTPV TPNSSASSSS TEAAGEEGGA RRKKDQLKRE 60 EDGDDMSNKV RKKPKKERRQ REPRFAFVTR SEVDHLDDGY RWRKYGQKAV KNSPYPRSYY 120 RCTTPKCPVK KRVERSYEDP TIVVTTYEGK HTHQSPHTVR ANTHQLAHPL PMMSTSFSQL 180 PQLGCTTQQG NINPNAFPSN LSSALQPSRF PDCGLLQDIL SSFLHGSQP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-30	89	156	10	77	Probable WRKY transcription factor 4
2lex_A	4e-30	89	156	10	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009394209.1	1e-151	PREDICTED: probable WRKY transcription factor 28
Swissprot	Q8VWJ2	2e-47	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	M0SJE5	1e-172	M0SJE5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P31310_001	1e-172	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP623	37	173

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	2e-42	WRKY DNA-binding protein 71

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]