PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P31090_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ZF-HD
Protein Properties Length: 283aa    MW: 29967.6 Da    PI: 8.8242
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P31090_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.43.1e-32126179458
            ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                            ++YkeCl+NhAa+lGgh+vDGCgEfmp+ g+  t++alkCaACgCHR+FHRre+e
  GSMUA_Achr3P31090_001 126 TKYKECLRNHAAALGGHVVDGCGEFMPN-GDPDTPEALKCAACGCHRSFHRRETE 179
                            58*************************9.6667********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.8E-30126178IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-18127180IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.6E-28127177IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.417128177IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466897.26E-17212277IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28213280IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-24220274IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEFRNPGEMG IPSSSSGYNA SLGVRSAFSK PTLSPSSSLV SPRGAAVDGG GVGGGPRNGD  60
ILGNTKPSNL VSNLIALDHR PGSLGNNADQ ASISNSSPGV AGVGVSVNSE PAASATTTVT  120
AADIPTKYKE CLRNHAAALG GHVVDGCGEF MPNGDPDTPE ALKCAACGCH RSFHRRETEG  180
GANAVNSYYH GTTRPPLPSP ALPGEEMIDT GTPTPSAMPK KRFRTKFTAE QKEKMLAFAE  240
RWRIQRQDDA VVEQFCSEIG VRRQVLKVWM HNNKHMITRK QQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-272212751874ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394611.11e-171PREDICTED: zinc-finger homeodomain protein 2-like
SwissprotQ9SB614e-60ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLM0SJC30.0M0SJC3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P31090_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-61homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]