PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P31070_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | GATA | ||||||||
Protein Properties | Length: 211aa MW: 22170.3 Da PI: 8.2577 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.8 | 2e-20 | 101 | 135 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++ GSMUA_Achr3P31070_001 101 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 135 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.1E-18 | 95 | 146 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.81E-14 | 98 | 142 | No hit | No description |
PROSITE profile | PS50114 | 13.969 | 98 | 131 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.7E-17 | 99 | 136 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.85E-13 | 100 | 132 | No hit | No description |
Pfam | PF00320 | 4.4E-18 | 101 | 135 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 101 | 126 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MLHRCGHQSS SYPCSCGSAY FSVVFPVTGK QSTDEDHDVA RSGCSSPSSV DCTLSLGTPS 60 TRQTENKAAA AASSTISNAF YGGATNGSNF GGDPLLLARR CANCDTTSTP LWRNGPRGPK 120 SLCNACGIRY KKEERRTAAS MAPPSSSSPV TSAAGEKQLR SPWSCYDSSA TKGNSSIAMY 180 DDDTAGHGEA SYLAPSPQFS ARNRPSLSQY H |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00110 | ampDAP | Transfer from AT2G18380 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009394239.1 | 1e-135 | PREDICTED: GATA transcription factor 18-like | ||||
Swissprot | Q9ZPX0 | 2e-32 | GAT20_ARATH; GATA transcription factor 20 | ||||
TrEMBL | M0SJC1 | 1e-153 | M0SJC1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P31070_001 | 1e-153 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18380.1 | 3e-32 | GATA transcription factor 20 |
Publications ? help Back to Top | |||
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