PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P30880_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 126aa    MW: 14011.7 Da    PI: 8.2088
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P30880_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.71.2e-233692359
                           -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY  3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                           Dgy+WrKYGqK + + +  rsY++C  +gC++kk+ve   +dp+ v++tY g H+h+
  GSMUA_Achr3P30880_001 36 DGYAWRKYGQKFILKIRKNRSYFKCREEGCKAKKRVEWPPSDPSNVKVTYDGVHHHP 92
                           9*******************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.2512994IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.8E-253094IPR003657WRKY domain
SuperFamilySSF1182908.24E-233194IPR003657WRKY domain
SMARTSM007742.6E-243493IPR003657WRKY domain
PfamPF031061.6E-213692IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MDAAAQPTAY LEGEASEEHD PSGTGTVGQS LEMPGDGYAW RKYGQKFILK IRKNRSYFKC  60
REEGCKAKKR VEWPPSDPSN VKVTYDGVHH HPSPQLLSAS YREERAGMAN RYNLVIQVLG  120
PPGDSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-1331941477Probable WRKY transcription factor 4
2lex_A5e-1331941477Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018678865.12e-91PREDICTED: probable WRKY transcription factor 45 isoform X2
TrEMBLM0SJA26e-90M0SJA2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P30880_0019e-91(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101583444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55600.12e-16WRKY DNA-binding protein 10