PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P29940_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 581aa    MW: 61643.8 Da    PI: 8.2668
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P29940_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-057395123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C++C+k F r  nL+ H r H
  GSMUA_Achr3P29940_001 73 FVCEICNKGFQRDQNLQLHRRGH 95
                           89*******************88 PP
2zf-C2H2110.0013149171123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            +kC +C+k +  +s+ k H +++
  GSMUA_Achr3P29940_001 149 WKCDKCSKKYAVQSDWKAHSKVC 171
                            58*****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.0E-57295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.4E-77295No hitNo description
PROSITE profilePS5015710.9497395IPR007087Zinc finger, C2H2
SMARTSM003550.0177395IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SMARTSM00355210114144IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.600.001137169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.4E-7144169No hitNo description
SMARTSM00355150149169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MELENSSVMT VSNSGSGEGS VSSSSQLQLP APPPQPPPPN PVVKKKRNLP GTPDPEAEVI  60
ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRTGKEPR KRVYVCPEPS  120
CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDWKAHSKV CGTREYRCDC  180
GTLFSRRDSF ITHRAFCDAL AEESGKKGPG AQTSDPKPSA EEEKATATEE ETAAEEVTAA  240
TEAAAETAPA AVVAAPLPPQ QVAPLELQGW WFSRGLGHDR WSLLSSDALR VPSLSIQMVK  300
RKVELLEKKL SIAVDELKEL ESKKSTHLHR IIAPLLYMPP PSASLANTSG VSCSSSSSSS  360
NTSLFASLFA STTSTAVAHS TATFSDLMSV MGHADRPLTE PPSLCLATNG GPASLFSPQA  420
QSHDRRPFAP PPPSPHMSAT ALLQKAAQMG AAATGSSFLK GFGLDASSGH QENIQDDGLQ  480
WGHQRKLEPE PAPMLSAGLG LGLPYEPDLM MGSSSLFGSK PATLDFLGLG MGPVDGTANG  540
GLSALMTSVS GGGGGGLNMG PGTAAAGWEG TERKPSSPAI R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33145206364Zinc finger protein JACKDAW
5b3h_F1e-33145206364Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396403.10.0PREDICTED: protein indeterminate-domain 2
TrEMBLM0SJ100.0M0SJ10_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P29940_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.16e-96indeterminate(ID)-domain 2