PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P29850_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 576aa    MW: 62979 Da    PI: 6.3982
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P29850_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.4e-31197254260
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                            +DgynWrKYGqK+vkgse+prsYY+Ct+++C++kk++ers+ d++++ i+Y g+H+h+k
  GSMUA_Achr3P29850_001 197 EDGYNWRKYGQKHVKGSEYPRSYYKCTHPNCEMKKQIERSH-DGQITGIIYIGKHDHPK 254
                            8****************************************.***************85 PP
2WRKY108.23.9e-34373431159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK+vkg+++prsYY+CtsagCpv+k+ver+++dpk+v++tYeg+Hnh+
  GSMUA_Achr3P29850_001 373 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCPVRKHVERASHDPKAVITTYEGKHNHD 431
                            59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-27193255IPR003657WRKY domain
SuperFamilySSF1182903.01E-24195255IPR003657WRKY domain
SMARTSM007747.3E-34196254IPR003657WRKY domain
PfamPF031067.4E-24197253IPR003657WRKY domain
PROSITE profilePS5081123.422197255IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.0E-38359433IPR003657WRKY domain
SuperFamilySSF1182906.54E-30365433IPR003657WRKY domain
PROSITE profilePS5081139.398368433IPR003657WRKY domain
SMARTSM007743.3E-40373432IPR003657WRKY domain
PfamPF031061.1E-26374431IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MPPARLPITR APCLTIPPGF SPSALLESPV LLTNMKAEPS PTTGTLNLSS VIDKTVCSYT  60
LSSAKDASDV SAYDGGNSGD FEFKPHVPAS NSHLELMELL NENVNYTRLI FLHNNMSNIN  120
NQIRSQDRNC ITCNNELAPL ASAPNSTTKV SNLRSSLPAE AASGDLQLTK CSEQSSQMSQ  180
SDPSEPTPSS LLEKSAEDGY NWRKYGQKHV KGSEYPRSYY KCTHPNCEMK KQIERSHDGQ  240
ITGIIYIGKH DHPKPHPNRR LAAGAILSCQ EEEKTDNFSS LMSAEDESTS APGPTYHQAD  300
RNSTTELSPA SISENDVKVG CGQSDNCDEV AGDADLESKR RKIEINNNDA ASIGKLNHEP  360
RVVVQTLSEV DILDDGYRWR KYGQKVVKGN PNPRSYYKCT SAGCPVRKHV ERASHDPKAV  420
ITTYEGKHNH DVPAAKTANH EASVSMVTDG DNSLSIHASA ALNGMMRMRH FTHPFIQMES  480
NAISLDLGVG ISPVQSEITN EKQQCLENFQ IQHHQPQCVD SGNLVIQTTP LSNFHGSSHT  540
RIYPSGEDKG EGFTFKATPM SSDMYYSAAG NLVMGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-38197434878Probable WRKY transcription factor 4
2lex_A4e-38197434878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394385.10.0PREDICTED: WRKY transcription factor SUSIBA2
SwissprotQ6VWJ61e-178WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLM0SJ010.0M0SJ01_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P29850_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67403851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-119WRKY family protein