PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P29310_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

WRKY

Protein Properties

Length: 277aa MW: 30212.6 Da PI: 10.1368

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P29310_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.6	8.3e-31	217	275	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeHnh GSMUA_Achr3P29310_001 217 ADDCSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERCIEDPTMLIVTYEGEHNHA 275 599*********************9988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.6E-18	169	214	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	3.9E-33	204	275	IPR003657	WRKY domain
PROSITE profile	PS50811	29.057	211	274	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-26	214	275	IPR003657	WRKY domain
SMART	SM00774	1.8E-37	216	276	IPR003657	WRKY domain
Pfam	PF03106	6.6E-27	218	274	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MEGVEDANMA AVESCHRVLS LLSETQHQPL AHKSLLAETG TAVSKFTKVV SMLGNGVGHA 60 RLRRLKSPHQ LRFNHSIFLD NPAASRADPS AVLLQLLPRN LLQKPVNESN GGLNLMFDTS 120 SCTATASSSR SFLSSLSIDG SMGSMDGKAF NLFGGPQLSN PMNWHPHDRR CSGGGIDGSG 180 GKCGKTSRCH CSKKRKLRVK RTIKVPAISN KLADIPADDC SWRKYGQKPI KGSPYPRGYY 240 KCSSMRGCPA RKHVERCIED PTMLIVTYEG EHNHAKL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	8e-21	209	274	7	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009394451.1	1e-162	PREDICTED: protein WRKY1-like
Refseq	XP_018678605.1	1e-162	PREDICTED: protein WRKY1-like
Refseq	XP_018678606.1	1e-162	PREDICTED: protein WRKY1-like
Refseq	XP_018678607.1	1e-162	PREDICTED: protein WRKY1-like
Refseq	XP_018678608.1	1e-162	PREDICTED: protein WRKY1-like
Swissprot	Q93WU6	1e-85	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	M0SIU7	0.0	M0SIU7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P29310_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP617	38	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	4e-72	WRKY DNA-binding protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]