PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P28540_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 307aa    MW: 35139.6 Da    PI: 6.2831
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P28540_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.8e-151461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g W++eEde+l++ +  +G g+W+++++  g+ R++k+c++rw +yl
  GSMUA_Achr3P28540_001 14 KGLWSPEEDEKLYNHIIAFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                           678*******************************************97 PP
2Myb_DNA-binding43.29.3e-1467111147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg+++++E++ ++ ++  lG++ W++Ia+ ++ gRt++++k++w++ 
  GSMUA_Achr3P28540_001  67 RGSFSQQEEDVIIGLHGILGNR-WSKIASQLP-GRTDNEIKNFWNSC 111
                            899*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-24664IPR009057Homeodomain-like
PROSITE profilePS5129416.92961IPR017930Myb domain
SuperFamilySSF466891.33E-2712108IPR009057Homeodomain-like
SMARTSM007171.1E-111363IPR001005SANT/Myb domain
PfamPF002492.1E-131461IPR001005SANT/Myb domain
CDDcd001678.90E-101761No hitNo description
PROSITE profilePS5129424.07262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2465116IPR009057Homeodomain-like
SMARTSM007171.8E-1266114IPR001005SANT/Myb domain
PfamPF002493.3E-1267111IPR001005SANT/Myb domain
CDDcd001676.73E-869109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGRHSCCLRQ KLRKGLWSPE EDEKLYNHII AFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SQQEEDVIIG LHGILGNRWS KIASQLPGRT DNEIKNFWNS CLKKKLRLRG  120
IDPTTHRPLN EVKTQEETIR MYYSNSGANF EQLPEHPFPL IEIQTCLDSI ESNANFYYQF  180
HQPFEPLSQN ECLVKPELCD YGGVMDVPEN FGYGESSSNS GNWNCNVVPE IKHVFGSEAL  240
NWVSVSKAET LVEPHEHKHS SWRECQHVMS SEDFSTEPVG SLPRDLSDIC FNVPRDASVG  300
EFNVEFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-27311616128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394513.10.0PREDICTED: myb-related protein Hv33-like
TrEMBLM0SIM00.0M0SIM0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P28540_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.33e-79myb domain protein 55