PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P28210_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 433aa    MW: 47571.1 Da    PI: 7.9281
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P28210_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.51.5e-104772126
                           --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                           ++++ C +++rtG C yG++Ck++H+
  GSMUA_Achr3P28210_001 47 PGQPDCLYYLRTGVCGYGSKCKYNHP 72
                           5789*********************8 PP
2zf-CCCH35.12.2e-1190115227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            +++ C+ff++tG CkyG +Ck++H++
  GSMUA_Achr3P28210_001  90 GQPDCQFFLKTGMCKYGITCKYHHPR 115
                            6899********************96 PP
3zf-CCCH37.34.6e-12137160427
                            ---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                            + C ++++tG CkyG  CkF+H++
  GSMUA_Achr3P28210_001 137 KQCAHYMKTGSCKYGVACKFNHPQ 160
                            67********************97 PP
4zf-CCCH39.49.8e-13277302227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            ++++C+++++tG CkyG +Ck++H++
  GSMUA_Achr3P28210_001 277 DQPECQYYMKTGSCKYGTSCKYHHPK 302
                            689*********************96 PP
5zf-CCCH33.76.2e-11321346126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            ++++lC f+  +G CkyG +CkF H+
  GSMUA_Achr3P28210_001 321 PGQPLCTFYTTYGSCKYGTTCKFDHP 346
                            589**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.9114674IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-54673IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-84872IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-65174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-45273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.75688116IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-688115IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-890115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-693118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.976133161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6135161IPR000571Zinc finger, CCCH-type
SMARTSM003560.0016135160IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9136160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5138159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.986275303IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-6275302IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-10277302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6278304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-5281302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.056320348IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-6320347IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-8322346IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5323347IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-5325345IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MSDVRHNAVP NSSHASPDNI EGAMWQLNIE DGQEGADGQL NQYPDRPGQP DCLYYLRTGV  60
CGYGSKCKYN HPAHNEQITR FSGELPQRDG QPDCQFFLKT GMCKYGITCK YHHPRDKHDT  120
RLVQLNVFGL PIREDEKQCA HYMKTGSCKY GVACKFNHPQ PANPGSAFSV TGSSVYGYSG  180
SMAPTSGLTV IGGISSWPFS RFPYVSSPRM QGLPAYVPFV LAPSQGNMPV QQGWSTYMGS  240
MNDISSTDML VPSKIANSRH QEQPGSSMPL SLPERPDQPE CQYYMKTGSC KYGTSCKYHH  300
PKEKNQADMA TIGPLGLPLR PGQPLCTFYT TYGSCKYGTT CKFDHPLVNY YGYSLQPFAA  360
YSEPSALFPG QRSSKVTRTS AEDSSSKASK LPEQLAESEK GGPRMKSGTH ERGNPSANSS  420
PSDTEPHPES PQN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394545.10.0PREDICTED: zinc finger CCCH domain-containing protein 12-like
TrEMBLM0SII70.0M0SII7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P28210_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-89C3H family protein