PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P28130_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CO-like
Protein Properties Length: 280aa    MW: 31020.8 Da    PI: 7.1256
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P28130_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.18.9e-091357341
               zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                           +r+C+ + + + + +C+ +   lC+ C  ++H+       H +vp
  GSMUA_Achr3P28130_001 13 PRTCESCRSAPCTVYCRADAAALCAACDASIHSAnllarrHHRVP 57
                           689*****************************6689999977776 PP
2CCT70.93e-24210253144
                    CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                            Rea++lRY+eKrktR+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  GSMUA_Achr3P28130_001 210 REARVLRYREKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKKS 253
                            9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.5191158IPR000315B-box-type zinc finger
SMARTSM003366.3E-141158IPR000315B-box-type zinc finger
PfamPF006432.4E-61458IPR000315B-box-type zinc finger
PROSITE profilePS5101716.787210252IPR010402CCT domain
PfamPF062034.9E-18210252IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MLKVEESSGW AAPRTCESCR SAPCTVYCRA DAAALCAACD ASIHSANLLA RRHHRVPLLP  60
DLAGGGLVVR PGLSAAYHGA GGLSFAEEAD EFLDLVEYDS SENECGSDQQ QLLQEAQQFS  120
HGKSEERDHL VPNEQHQHSL QMEFDASNGF NYSSSLSHRI LSIRNNHVSL SSMDASVVPD  180
TSIGAPKGTM DLFSGHHPLQ VQPQLNLMDR EARVLRYREK RKTRRFEKTI RYASRKAYAE  240
TRPRIKGRFA KKSDVELEVD QMFSTAAVLA NSRFGVVPSF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as repressor of flowering under SD conditions, independently of HD1, EHD1, MADS50 and MADS51. Controls flowering time under SD conditions by negatively regulating the expression of HD3A and FTL. {ECO:0000269|PubMed:18449564}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases after the beginning of the dark period, peaks at dawn, stays high four hours and gradually decreases until sunset. {ECO:0000269|PubMed:18449564}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394556.11e-175PREDICTED: zinc finger protein CO3-like
SwissprotO821173e-61CO3_ORYSJ; Zinc finger protein CO3
TrEMBLM0SIH90.0M0SIH9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P28130_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1435899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.14e-33CONSTANS-like 2