PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P27880_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 275aa MW: 30465.8 Da PI: 10.5066 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98 | 6.1e-31 | 211 | 268 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK +kgs++pr+YY+C+s gCp++k+ver+a+dp+++++tYeg H+h+ GSMUA_Achr3P27880_001 211 DEYSWRKYGQKFIKGSPYPRGYYKCSSVkGCPARKHVERAADDPSMLIVTYEGVHRHS 268 9*************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 5.6E-6 | 188 | 207 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-31 | 198 | 268 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.333 | 204 | 270 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-26 | 206 | 269 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-36 | 209 | 269 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-26 | 211 | 267 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MGHLKMDGKM EVREAAAAGL RSLERVVFHL SHQQSPWDCR EITDQTIAKF KKVISALNRT 60 GHARFRRGPA QPAFSAEAEE APAVHYHALA RPPLPPAAVA TLNLDPTKLE EHLNVSAAVS 120 SAHKPPLAPS HKRKVPDHAH PPEAAKQAAR CCHCSKKRYP SSVAPKLNFA HPRISSLTRS 180 ATSSACDRKD REKRTVRVPA VGSRNADFPV DEYSWRKYGQ KFIKGSPYPR GYYKCSSVKG 240 CPARKHVERA ADDPSMLIVT YEGVHRHSPS RPACR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-20 | 206 | 267 | 14 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-20 | 206 | 267 | 14 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000269|PubMed:16623886}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells (PubMed:15618416, PubMed:16623886). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (PubMed:16623886). Repressed by GA (PubMed:15618416). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:16623886}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN396604 | 0.0 | FN396604.1 Musa balbisiana clone BAC MBP-26I6, complete sequence. | |||
GenBank | FN396606 | 0.0 | FN396606.1 Musa balbisiana BAC contig MBP-32N20c, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018678972.1 | 0.0 | PREDICTED: WRKY transcription factor WRKY51-like isoform X1 | ||||
Swissprot | Q0JEE2 | 7e-65 | WRK51_ORYSJ; WRKY transcription factor WRKY51 | ||||
TrEMBL | M0SIF4 | 0.0 | M0SIF4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P27880_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP617 | 38 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23320.1 | 7e-47 | WRKY DNA-binding protein 15 |