PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P27700_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 274aa MW: 30712.6 Da PI: 8.3831 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.8e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd+ll d++ +G g+W++ ++ g++R++k+c++rw++yl GSMUA_Achr3P27700_001 14 RGAWTSEEDKLLSDYILAHGLGRWRSLPANAGLNRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.8 | 1.1e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+ T+eE++l+++++++lG++ W++Ia +++ gRt++++k++w++yl GSMUA_Achr3P27700_001 67 KGNITQEEEDLIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTYL 112 6899******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.865 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.82E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.59E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.015 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-26 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.54E-13 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MRKASCCPKE GLNRGAWTSE EDKLLSDYIL AHGLGRWRSL PANAGLNRCG KSCRLRWLNY 60 LRPDIKKGNI TQEEEDLIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT YLRKKGLHSS 120 PSPASKNREV QTVKAVADKQ KGVEVNVIRT KAIRCTRSLF ADEVPASGMN NSAYSVLPSA 180 MFDYDTSDFS GNDPAPQAAK SVCSEENMQN SVFPQAADGF YRSSGSFHDS FSATASSSYF 240 NYTKICSTVL EKSEELHPFM CDDEWVSLLM HPNI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-27 | 12 | 115 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM205185 | 0.0 | KM205185.1 Musa AB Group R2R3 MYB transcription factor TT2-1 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018678809.1 | 1e-173 | PREDICTED: transcription factor TT2-like, partial | ||||
Swissprot | Q9FJA2 | 5e-62 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | M0SID6 | 0.0 | M0SID6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P27700_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 2e-64 | MYB family protein |