PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P27560_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | LSD | ||||||||
Protein Properties | Length: 207aa MW: 22156.2 Da PI: 8.2844 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 38.6 | 1.7e-12 | 91 | 115 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP+GA+sV+Ca+C +V GSMUA_Achr3P27560_001 91 CSGCRNLLLYPLGATSVCCAVCSAV 115 **********************998 PP | |||||||
2 | zf-LSD1 | 44.1 | 3.3e-14 | 130 | 154 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL++ rGA+sV+C++C+tV GSMUA_Achr3P27560_001 130 CGGCHTLLMFIRGATSVQCSCCHTV 154 ************************9 PP | |||||||
3 | zf-LSD1 | 36.4 | 8.3e-12 | 168 | 192 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+ lL+Y +GA+sV+Ca+C +V GSMUA_Achr3P27560_001 168 CGSCHMLLMYQYGARSVKCAVCSFV 192 **********************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.4E-11 | 88 | 118 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 2.4E-6 | 91 | 173 | IPR011031 | Multihaem cytochrome |
Pfam | PF06943 | 6.5E-10 | 91 | 115 | IPR005735 | Zinc finger, LSD1-type |
Gene3D | G3DSA:3.90.10.10 | 8.0E-5 | 106 | 189 | No hit | No description |
TIGRFAMs | TIGR01053 | 1.1E-13 | 127 | 156 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.0E-11 | 130 | 154 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.6E-10 | 165 | 194 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.2E-11 | 168 | 192 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MALMEIVGFR RLLQLSILPF WFPLKGNMNK NPSFLTQIGD GSANLCLMLK EDTVLGRRIR 60 HKPEMPVPLV PYPTPPVPFT PPNGGQSQLV CSGCRNLLLY PLGATSVCCA VCSAVTAVPP 120 PGTEMAQLIC GGCHTLLMFI RGATSVQCSC CHTVNLALEA NQVAHVNCGS CHMLLMYQYG 180 ARSVKCAVCS FVTSVGALPS TEQKPSS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009392782.1 | 1e-112 | PREDICTED: protein LSD1-like | ||||
Swissprot | Q0J7V9 | 3e-79 | LSD1_ORYSJ; Protein LSD1 | ||||
TrEMBL | M0SIC2 | 1e-149 | M0SIC2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P27560_001 | 1e-149 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 8e-59 | lsd one like 1 |
Publications ? help Back to Top | |||
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