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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | GSMUA_Achr3P26840_001 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 363aa MW: 42466.1 Da PI: 8.3148 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 48.2 | 3.6e-15 | 37 | 118 | 1 | 80 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtk 80
+fY +Y+ ++GFs+r+++ ++s+++++it+r+f+Cskeg+r ++k++ ++ +++r+etrt k++v ++k++k +
GSMUA_Achr3P26840_001 37 EFYTQYGWKTGFSIRREYGNRSRKTDQITSRKFTCSKEGFRGPDKRQekVRHPKSPRPETRTVSCLKVTVILRKNSKLFFRH 118
6****************************************99998843445566888999866566666666666665555 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 1.3E-12 | 37 | 120 | IPR004330 | FAR1 DNA binding domain |
| PROSITE profile | PS50966 | 10.348 | 201 | 237 | IPR007527 | Zinc finger, SWIM-type |
| SMART | SM00575 | 9.2E-7 | 212 | 239 | IPR006564 | Zinc finger, PMZ-type |
| Pfam | PF04434 | 2.4E-5 | 213 | 235 | IPR007527 | Zinc finger, SWIM-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0008270 | Molecular Function | zinc ion binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 363 aa Download sequence Send to blast |
MVDNLGNNES TESCTDSVIS CLPREGMEFD SEQDAHEFYT QYGWKTGFSI RREYGNRSRK 60 TDQITSRKFT CSKEGFRGPD KRQEKVRHPK SPRPETRTVS CLKVTVILRK NSKLFFRHFE 120 RVFNDNWYKE LESEYNSREK LPKFKIKAPM LMQTAVIYTN NIFQLFQSEY EEFQSAYITY 180 RNESGPTHEY LVAICDQPTV YKVIGDPLEQ SVSCTCRKFE THGYLCSHAV KVLDAMDIKY 240 LPSKYISRRW SKDAWDESMK DQDGKNIQLT TKMKASMHYR YLCPKYVRLV ARASECEEAY 300 KFLDKCSADL SMKVEEIIQK GKDINEAAFE TRDPLSLSTS YQKDESVKDF ESSDIIRAKG 360 LKN |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009392874.2 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
| TrEMBL | M0SI50 | 0.0 | M0SI50_MUSAM; Uncharacterized protein | ||||
| STRING | GSMUA_Achr3P26840_001 | 0.0 | (Musa acuminata) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP4651 | 3 | 3 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G76320.1 | 2e-18 | FAR1-related sequence 4 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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