PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P26180_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 295aa    MW: 32406 Da    PI: 8.1377
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P26180_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.3e-11118163555
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            h  +Er+RR+++ ++f  L  ++P +     kK++Ka++L  A+eY+k L+
  GSMUA_Achr3P26180_001 118 HVVAERKRREKLSQRFIALSAVVPGL-----KKMDKASVLGDAIEYLKRLE 163
                            8899**********************.....9****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.027113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-17117179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-17118181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-9118163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.15E-12118167No hitNo description
SMARTSM003531.4E-14119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEQSFFDQWE WTALDQLGAD QLGVGLLRDV EPSPSSESHA SFPKKATKTD ASWPRILSFG  60
RPESPICHSA LYVPTMRPKE EMAVPIPGGS KRDYDAMSGQ GSKRANMAAR TASHNPEHVV  120
AERKRREKLS QRFIALSAVV PGLKKMDKAS VLGDAIEYLK RLEEQVKSLE DQVAKRQAEK  180
AVLVKKSRLC ADDDDSSSDE HPCGGPAPQI EARVCDKAVL IKIHCENRKG VLVKALSEIE  240
KLHLSVGNTS VIPFAAASLD ITMEEEFCVT AKEVVKKLNS AFRQRSGLVR GGQEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-14118166957Transcription factor MYC2
5gnj_B5e-14118166957Transcription factor MYC2
5gnj_E5e-14118166957Transcription factor MYC2
5gnj_F5e-14118166957Transcription factor MYC2
5gnj_G5e-14118166957Transcription factor MYC2
5gnj_I5e-14118166957Transcription factor MYC2
5gnj_M5e-14118166957Transcription factor MYC2
5gnj_N5e-14118166957Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121126ERKRRE
2122127RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392955.10.0PREDICTED: transcription factor bHLH25
TrEMBLM0SHY40.0M0SHY4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P26180_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-56bHLH family protein