PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P25850_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LBD
Protein Properties Length: 353aa    MW: 39336.9 Da    PI: 6.7459
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P25850_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601278.6e-40103201199
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            aCaaCk++rrkC++dC lapyfpa+q++kf n+h+lFG+sn++k++++l++ +r++ams+++y++++ra+dPv G+++ i++l++q++
  GSMUA_Achr3P25850_001 103 ACAACKYQRRKCKPDCLLAPYFPANQQQKFLNAHRLFGVSNIVKIIRDLDPFQRNEAMSTIIYQSDMRAHDPVGGCYRYIRDLERQID 190
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallke 99 
                            + ++ela + +
  GSMUA_Achr3P25850_001 191 HDSTELAFVLR 201
                            *****998755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.029102203IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-37103198IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGSLCCPPPH HPPRPTTLPT DPIVAKNRRT NNHHSNNNQN ILLLLFLLFL VLRVVGACAT  60
FIATPLDPIM TSATTSNTTA TNTSASSSSN NKSSSSQPAA NSACAACKYQ RRKCKPDCLL  120
APYFPANQQQ KFLNAHRLFG VSNIVKIIRD LDPFQRNEAM STIIYQSDMR AHDPVGGCYR  180
YIRDLERQID HDSTELAFVL RQLALCRAHT AQTITPGIPT LAPDLDVNPN LLLNTPTDDT  240
ENVIYDANLF PSMNQPQDQQ QYYNYLCYDS GISRDPNNDP NASSNSNSVN NNVLSLQQQH  300
HHHHHHHPQS VVQDEDVKPL VDMFEIRQTL IGGDDEGDSR INTTNEVGPL HCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-29931961104LOB family transfactor Ramosa2.1
5ly0_B2e-29931961104LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393980.20.0PREDICTED: uncharacterized protein LOC103979531
TrEMBLM0SHV10.0M0SHV1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P25850_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52283461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-39LOB domain-containing protein 22