PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P25410_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 326aa MW: 36035.9 Da PI: 9.5496

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P25410_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.3	6.9e-07	75	97	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F+r nL+ H r H GSMUA_Achr3P25410_001 75 FICEICNKGFKREQNLQLHRRGH 97 89*******************88 PP
2	zf-C2H2	14.2	0.00013	152	174	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ GSMUA_Achr3P25410_001 152 WKCDKCSKRYAVNSDWKAHVKTC 174 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.69E-8	74	97	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.2E-6	74	97	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0021	75	97	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	3.7E-6	75	97	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.99	75	97	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	77	97	IPR007087	Zinc finger, C2H2
SMART	SM00355	120	117	147	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.2E-5	140	173	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.69E-8	147	172	No hit	No description
SMART	SM00355	130	152	172	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MSNSTSISDE ASVSSETRAH GHFSLSSMLT SVSPHHHRPQ PPPKAKKKRS QPGNPDPEAE 60 VVALSPTTLM ATNRFICEIC NKGFKREQNL QLHRRGHNLP WKLRQRGSEE VARKRVYVCP 120 EPSCVHHHPS RALGDLTGIK KHFSRKHGEK KWKCDKCSKR YAVNSDWKAH VKTCGAREYR 180 CDCGTLFSRK DTFITHRAFC DALAEESARL MAATATTFPP LHQPLFHPSS SWNPLICPNP 240 DLTLNPSSDG DLGALQVKPE DKLSSLHHIH LRAITSPHLS ATALLQRASI MGPMSFTNTA 300 SSVGYDGAMS GGVVSSGVDV QDLPMW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-34	148	210	3	65	Zinc finger protein JACKDAW
5b3h_F	1e-34	148	210	3	65	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF467410	1e-124	EF467410.1 Musa acuminata microsatellite Mac17 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009393052.1	0.0	PREDICTED: protein indeterminate-domain 7-like
Swissprot	Q8H1F5	1e-110	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	M0SHQ7	0.0	M0SHQ7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P25410_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-105	indeterminate(ID)-domain 12

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]