PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P25080_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 332aa    MW: 36534.6 Da    PI: 6.6801
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P25080_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.43.5e-29123183158
                            ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                            +dDgy+WrKYGqK++ gs++pr+YYrCt++   gCp++k+v+rs+edp ++++tY+g H++
  GSMUA_Achr3P25080_001 123 VDDGYSWRKYGQKDILGSKHPRGYYRCTHRimqGCPATKQVQRSDEDPLLFHVTYHGAHTC 183
                            59***************************9999**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182902.22E-26121183IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-29121183IPR003657WRKY domain
SMARTSM007749.4E-42123185IPR003657WRKY domain
PROSITE profilePS5081122.779124181IPR003657WRKY domain
PfamPF031062.7E-27124183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEKGKASEQP GLLLAELARV QELAREMEAE HGRHSTDEFR RSLLHELLVS IEKAICMAKS  60
TAPDVNPQPA DGDSPRSSGE SSRSETSKLT FREQMSKKRK KLPRWTREVR VSSGAGGGVH  120
GPVDDGYSWR KYGQKDILGS KHPRGYYRCT HRIMQGCPAT KQVQRSDEDP LLFHVTYHGA  180
HTCLPKSPAA PASASAWLSQ EQQQQEEKEP VDRQQQNQDL LLRFQTGLRV KTEDLELGGH  240
GQNSLSFSFA SPSTTTDSGF ISRASPAFLS PTSDSTYFSF SPYSLKGGGI KLRSPESGIT  300
GANSASDSPA AADMDLMLEE LDFESDFSSF FS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-21123183868OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196100KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393089.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLM0SHM40.0M0SHM4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P25080_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.16e-38WRKY family protein