PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P24560_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 232aa MW: 26787.1 Da PI: 9.1952 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.7 | 9.8e-16 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+ r t+ kRr+g++KK ELS+LC++e++v+++ ++ GSMUA_Achr3P24560_001 11 IVNDATRRATLKKRRKGLIKKVRELSILCGVEACVVVYTPH 51 679999********************************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.7E-18 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.114 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.63E-28 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 5.62E-22 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.4E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-16 | 11 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.4E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MARNKVKLAW IVNDATRRAT LKKRRKGLIK KVRELSILCG VEACVVVYTP HENQPVAWPS 60 LQEAVQMMAR FKSMPEIERS RKMVNQEAFL HQRIAKLLEQ LRRQQRENRE IEMTWLTWEG 120 FHGRSFDDLD VEDASALAWS VETKLKEVSD RREELLKRLA MAPPPPPMPV VPAATVTGMM 180 PLPMERINTV NQGHAAEGSQ RLNWLMDIMS PWSEEGQMYV DPISSWPDSL FP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 21 | 25 | KKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009393997.1 | 1e-171 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | M0SHH2 | 1e-170 | M0SHH2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P24560_001 | 1e-170 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-28 | AGAMOUS-like 80 |