PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P24300_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | bZIP | ||||||||
Protein Properties | Length: 136aa MW: 15586.8 Da PI: 8.7832 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35 | 3e-11 | 17 | 74 | 6 | 63 |
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++rk +NRe+ArrsR RK++ + eL+ L+ eN++ +++e+l + + l+se+ GSMUA_Achr3P24300_001 17 TQKRKLSNRESARRSRMRKQQHLLELTSDETRLKLENRQILERVERLAQGHQWLESEN 74 69**********************************************9988888775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.9E-11 | 12 | 76 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.507 | 14 | 77 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.2E-8 | 15 | 95 | No hit | No description |
SuperFamily | SSF57959 | 1.41E-9 | 16 | 70 | No hit | No description |
Pfam | PF00170 | 2.3E-8 | 16 | 64 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 2.43E-12 | 18 | 65 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 19 | 34 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MSAARSRQSL LAVNERTQKR KLSNRESARR SRMRKQQHLL ELTSDETRLK LENRQILERV 60 ERLAQGHQWL ESENAVLRAE VAELAESLRS LESVLCYAEE FDGVATDAVK PSDHLLRRWP 120 PACVMASASD AMLFLV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 28 | 35 | RRSRMRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009393176.1 | 7e-93 | PREDICTED: ocs element-binding factor 1-like | ||||
Swissprot | P24068 | 3e-25 | OCS1_MAIZE; Ocs element-binding factor 1 | ||||
TrEMBL | M0SHE6 | 2e-91 | M0SHE6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P24300_001 | 3e-92 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1886 | 35 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18160.1 | 9e-15 | basic leucine-zipper 2 |
Publications ? help Back to Top | |||
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