PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P23360_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 280aa    MW: 31157.1 Da    PI: 8.0547
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P23360_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.54.5e-52111381128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                            +ppGfrFhP+d+elv++yL+kkv g++ +    ++ +vd++k+ePwdLp+++  + kew+fFs  d+kyatg+r+nrat+sgyWkatg
  GSMUA_Achr3P23360_001  11 MPPGFRFHPRDDELVCDYLTKKVCGNSgIYGCPMMIDVDLNKCEPWDLPEMACVGGKEWFFFSLPDRKYATGQRTNRATESGYWKATG 98 
                            79***********************99744446699*************7667799******************************** PP

                    NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            kd++v++ +g lvg++ktLvfy+grapkg+kt+Wvmhe+r+
  GSMUA_Achr3P23360_001  99 KDRQVIR-GGLLVGMRKTLVFYQGRAPKGRKTNWVMHEFRM 138
                            ******9.9******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-614162IPR003441NAC domain
PROSITE profilePS5100555.69611162IPR003441NAC domain
PfamPF023651.4E-2612138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MSFLSMVEAR MPPGFRFHPR DDELVCDYLT KKVCGNSGIY GCPMMIDVDL NKCEPWDLPE  60
MACVGGKEWF FFSLPDRKYA TGQRTNRATE SGYWKATGKD RQVIRGGLLV GMRKTLVFYQ  120
GRAPKGRKTN WVMHEFRMVA GADDPQKLSL EEDWVLCRVF HKSRALSGQP ATEAGNGEDI  180
SSSSLPPLMN GYLTFEQVSC FSNLGPVHPA SGRTHEANPS SSFARSLQAR SSSAHAGGLP  240
SLDSSDNVAN YFTKLDSSNP WREAPRSSDG NVNSYMWNPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-49716311169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393303.10.0PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ84TE62e-85NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLM0SH520.0M0SH52_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P23360_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.27e-88NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]