PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P23290_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 820aa    MW: 91173.3 Da    PI: 6.2776
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P23290_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.33.3e-24128229199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F
  GSMUA_Achr3P23290_001 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSLQPPA-QELIAMDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVLF 214
                            99*****************************9777666.49*********************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               ++++ +l+++++r+
  GSMUA_Achr3P23290_001 215 I--WNDNNQLLLGIRRA 229
                            *..7777778***9997 PP
2Auxin_resp119.52.7e-39254337183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaa+t+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+ dldpv+WpnS+Wrs+k
  GSMUA_Achr3P23290_001 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGIGDLDPVHWPNSHWRSVK 337
                            79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-47113257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-41120243IPR015300DNA-binding pseudobarrel domain
CDDcd100172.66E-22127228No hitNo description
SMARTSM010191.1E-25128230IPR003340B3 DNA binding domain
PROSITE profilePS5086313.169128230IPR003340B3 DNA binding domain
PfamPF023628.1E-23128229IPR003340B3 DNA binding domain
PfamPF065071.7E-34254337IPR010525Auxin response factor
PfamPF023091.3E-8677772IPR033389AUX/IAA domain
SuperFamilySSF542771.44E-7682761No hitNo description
PROSITE profilePS5174522.7687771IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
MRLSSSGLGN QQQEDTEEQR CLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN  60
KEIDSLPSYR SLPPQLVCQL HNVTMHADVE SDEVYAQMTL QPLNPEEQKE PYLPTELGTA  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS LQPPAQELIA MDLHGNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLIAGD SVLFIWNDNN QLLLGIRRAN RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRISVGMRFR  300
MLFETEESSV RRYMGTITGI GDLDPVHWPN SHWRSVKVGW DESTAGERQP KVSLWEIEPL  360
TTFPMYPSPF PFRLKRPWPP GLPSLHGGKH DDFSLSSPVT WFRNGGNPGL QSLNFQGTGV  420
TPWTQPRFDT TILGLPPDMY LTMAADGIQE TRTMDPTKQV SSAMLQFQQI QNTASMYSPM  480
PPSQLLHHGQ SQLPQAFLQN IQLNQVQSQS QSEFFQHQLQ QQKFLSDHQQ VPSEASSRSF  540
SDSNTNCVST SDASPLHNIL SQFSPGEASH LLSVSEPNIS QRSVMLPPFP GRECAVNQDG  600
NMDARNQLLF GVNIDSSSLL MQNGMTSLCN VGRESDSTGM HYDASNFVGS SVHDFALSQA  660
LTGSGGLEET GFLQSSQNAD QLNQKGGTFV KVSKSGSFGR SLDITRFSSY NELRSELGRM  720
FGLEGQLEDP LRSGWQLVFV DRENDILLVG DDPWQEFVNN VWCIKILSPQ EVQQMGKHDV  780
NFLNSGSIKM LPTNGCDDYI SRQDSRNLST RVASMGSLEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1552235851388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393314.10.0PREDICTED: auxin response factor 17-like
RefseqXP_009393315.10.0PREDICTED: auxin response factor 17-like
RefseqXP_009393316.10.0PREDICTED: auxin response factor 17-like
RefseqXP_009393317.10.0PREDICTED: auxin response factor 17-like
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLM0SH450.0M0SH45_MUSAM; Auxin response factor
STRINGGSMUA_Achr3P23290_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]