PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P21730_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | LBD | ||||||||
Protein Properties | Length: 219aa MW: 22634.4 Da PI: 8.7238 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 80.4 | 2.9e-25 | 25 | 82 | 1 | 58 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredam 58 +CaaCk+lrrkC++dCv+apyfp +qp+kf vh++FGasnv+kll++l++ +reda GSMUA_Achr3P21730_001 25 PCAACKFLRRKCQPDCVFAPYFPPDQPQKFVHVHRVFGASNVTKLLNELHPYQREDAH 82 7*****************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.983 | 24 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.2E-25 | 25 | 82 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MASSSAQVPL SSSSASASPS ATSSPCAACK FLRRKCQPDC VFAPYFPPDQ PQKFVHVHRV 60 FGASNVTKLL NELHPYQRED AHQLRQLQMD LSFAKSELSK YQSAAAVAAA AAASTTGLGA 120 TTPAAAAARG HGYIVPGFGL GRDQCYPAAA RDPSHSQQMM MRNYDADLAA RLGANGAYDA 180 GLAAAAMNAT TAATIGLFGG QFPRPSAAGG DERSGIGPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-31 | 24 | 101 | 10 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-31 | 24 | 101 | 10 | 114 | LOB family transfactor Ramosa2.1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation (By similarity). {ECO:0000250}. | |||||
UniProt | Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373607 | 7e-68 | AK373607.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3036G24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009393499.1 | 1e-111 | PREDICTED: LOB domain-containing protein 6-like | ||||
Swissprot | A2WXT0 | 3e-52 | LBD6_ORYSI; LOB domain-containing protein 6 | ||||
Swissprot | Q8LQH4 | 3e-52 | LBD6_ORYSJ; LOB domain-containing protein 6 | ||||
TrEMBL | M0SGN9 | 1e-156 | M0SGN9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P21730_001 | 1e-157 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2267 | 38 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.4 | 2e-33 | LBD family protein |
Publications ? help Back to Top | |||
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