PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P21690_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 356aa MW: 39983.2 Da PI: 8.0262

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P21690_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.5	1.6e-50	22	147	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d GSMUA_Achr3P21690_001 22 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPEFATIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGAD 108 79*************************.89***********8777899****************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++++++ +glkktLvfy+g+apkg +t+W+m+eyrl GSMUA_Achr3P21690_001 109 RMIKAENHRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 147 ***********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	55.318	21	168	IPR003441	NAC domain
SuperFamily	SSF101941	9.29E-56	21	167	IPR003441	NAC domain
Pfam	PF02365	2.9E-25	23	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MAIAAAMSGD DGSDGHEHDL VMPGFRFHPT EEELIEFYLR RKVEGKRFNV ELITFLDLYR 60 YDPWELPEFA TIGEKEWYFY VPRDRKYRNG DRPNRVTTSG YWKATGADRM IKAENHRSIG 120 LKKTLVFYSG KAPKGIRTSW IMNEYRLPHS ETDQHQKTEI SLCRVHKRVG VEDHCQIPAT 180 LASKPSSSRG TGIDKRHTPR RQPPGFEASG VGSSLTSAME KVPKVQGAST THNLASPILS 240 TVYGSTASMP SLSSTTSMEE DSTSLHHAKN TSIALIPACS LLASANSSVS APGIEELNRF 300 VGYTQSFMEQ QPNQLLPMPP QPQLNQLPMS LPMISEKLWE WWNPLCEAGK DYTSFK

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MAIAAAMSGD DGSDGHEHDL VMPGFRFHPT EEELIEFYLR RKVEGKRFNV ELITFLDLYR  60
YDPWELPEFA TIGEKEWYFY VPRDRKYRNG DRPNRVTTSG YWKATGADRM IKAENHRSIG  120
LKKTLVFYSG KAPKGIRTSW IMNEYRLPHS ETDQHQKTEI SLCRVHKRVG VEDHCQIPAT  180
LASKPSSSRG TGIDKRHTPR RQPPGFEASG VGSSLTSAME KVPKVQGAST THNLASPILS  240
TVYGSTASMP SLSSTTSMEE DSTSLHHAKN TSIALIPACS LLASANSSVS APGIEELNRF  300
VGYTQSFMEQ QPNQLLPMPP QPQLNQLPMS LPMISEKLWE WWNPLCEAGK DYTSFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-55	23	168	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-55	23	168	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-55	23	168	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-55	23	168	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-55	23	168	22	168	NAC domain-containing protein 19
3swm_B	2e-55	23	168	22	168	NAC domain-containing protein 19
3swm_C	2e-55	23	168	22	168	NAC domain-containing protein 19
3swm_D	2e-55	23	168	22	168	NAC domain-containing protein 19
3swp_A	2e-55	23	168	22	168	NAC domain-containing protein 19
3swp_B	2e-55	23	168	22	168	NAC domain-containing protein 19
3swp_C	2e-55	23	168	22	168	NAC domain-containing protein 19
3swp_D	2e-55	23	168	22	168	NAC domain-containing protein 19
4dul_A	2e-55	23	168	19	165	NAC domain-containing protein 19
4dul_B	2e-55	23	168	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00257	DAP	Transfer from AT2G02450	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009393504.1	0.0	PREDICTED: NAC domain-containing protein 35-like
Swissprot	Q9ZVP8	1e-100	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	M0SGN5	0.0	M0SGN5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P21690_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7706	36	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-104	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]