PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P21060_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 303aa    MW: 34199.1 Da    PI: 6.3113
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P21060_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.5e-171865148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT eEd ll ++++ +G g+W++ a++ g++Rt+k+c++rw++yl
  GSMUA_Achr3P21060_001 18 RGPWTLEEDTLLMHYITCHGEGRWNLLAKCSGLKRTGKSCRLRWLNYL 65
                           89********************************************97 PP
2Myb_DNA-binding52.71e-1671114146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg+ ++eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  GSMUA_Achr3P21060_001  71 RGNLSPEEQLLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 114
                            7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6191365IPR017930Myb domain
SuperFamilySSF466891.87E-3015112IPR009057Homeodomain-like
SMARTSM007171.1E-121767IPR001005SANT/Myb domain
PfamPF002491.8E-141865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-221972IPR009057Homeodomain-like
CDDcd001678.09E-102065No hitNo description
PROSITE profilePS5129425.58366120IPR017930Myb domain
SMARTSM007172.9E-1570118IPR001005SANT/Myb domain
PfamPF002491.1E-1571114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-2473119IPR009057Homeodomain-like
CDDcd001677.06E-1275114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSDKRGSSGK HEEMELRRGP WTLEEDTLLM HYITCHGEGR WNLLAKCSGL KRTGKSCRLR  60
WLNYLKPDVK RGNLSPEEQL LILELHSKWG NRWSRIAQHL PGRTDNEIKN YWRTRVQKQA  120
RQLKVDPNSS MFRDALQCYW TPRLREQIIG SSQTLRSVDA NANTTTATDE AHRVLQSCGS  180
YELPEPESRS LSTSSCSVVL SQLPVDLSDF PSGPSDELSG VTFDPFSSVC SINDFYDLDT  240
WDIAPVSASA PSHSASDHSN NVGDSLWSMD DLYDMSKTYE SAAETKVPFA DNSQVVKYIS  300
PSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-25151204108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00159DAPTransfer from AT1G25340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394051.10.0PREDICTED: transcription factor MYB108-like
TrEMBLM0SGH20.0M0SGH2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P21060_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.16e-77myb domain protein 62