PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P21000_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 254aa MW: 28948.3 Da PI: 9.844 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 7.1e-17 | 77 | 124 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd++l+d+v +G g+W++ ++ g+ R++k+c++rw +yl GSMUA_Achr3P21000_001 77 RGAWSKEEDQKLIDYVGVHGEGCWRALPKAAGLLRCGKSCRLRWINYL 124 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.3e-16 | 130 | 175 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E +l+++++++lG++ W++Ia +++ gRt++++k++w+++l GSMUA_Achr3P21000_001 130 RGNFQEDEADLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 175 899*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-23 | 68 | 127 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.59 | 72 | 124 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.35E-27 | 74 | 171 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-13 | 76 | 126 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-15 | 77 | 124 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.92E-10 | 79 | 124 | No hit | No description |
PROSITE profile | PS51294 | 25.518 | 125 | 179 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-25 | 128 | 179 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-14 | 129 | 177 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-14 | 130 | 175 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.06E-9 | 135 | 175 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MTAWAQREIY RSAWEHVPCV HPAPVLRTYL GKTRYLRSLS PATILRRHLR SWHLFLSPCL 60 CSTAMRSPCC DKQGTNRGAW SKEEDQKLID YVGVHGEGCW RALPKAAGLL RCGKSCRLRW 120 INYLRPDVKR GNFQEDEADL IIKLHALLGN RWSLIAGRLP GRTDNEVKNY WNSHLRKKLT 180 SMGIDPDNHR VARKNMSFWH LNSTVGDDRV RCAGSGSLEE NSSGLPDLNL DLTICIPSSV 240 MEKNTANPTL LLFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-27 | 76 | 179 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009393580.1 | 1e-133 | PREDICTED: myb-related protein 308 | ||||
Swissprot | P81393 | 3e-75 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | M0SGG6 | 0.0 | M0SGG6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P21000_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 3e-73 | myb domain protein 6 |
Publications ? help Back to Top | |||
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