PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P19490_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 284aa    MW: 32484.8 Da    PI: 9.364
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P19490_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-082476248
                           SSS-HHHHH.......HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  2 grWTteEde.......llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           g WT +Ed        ll+ + +++G + W+ Ia+++  gR +kqc++rw+++l
  GSMUA_Achr3P19490_001 24 GQWTLDEDRqafflpfLLLSLSQRYGLKKWSHIAQMLH-GRIGKQCRERWHNHL 76
                           55666666533333336899999***************.*************97 PP
2Myb_DNA-binding53.17.2e-1782124145
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            ++ W +eEd++l++a+ + G++ W+ Ia++++ gRt++++k++w+
  GSMUA_Achr3P19490_001  82 KDTWCEEEDKILIQAHSEIGNK-WAEIAKRLP-GRTENSIKNHWN 124
                            578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.9371876IPR017930Myb domain
SMARTSM007171.7E-72278IPR001005SANT/Myb domain
PfamPF002494.6E-82376IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-212483IPR009057Homeodomain-like
CDDcd001672.86E-72676No hitNo description
SuperFamilySSF466891.63E-2756132IPR009057Homeodomain-like
PROSITE profilePS5129424.53877131IPR017930Myb domain
SMARTSM007174.5E-1581129IPR001005SANT/Myb domain
PfamPF002491.4E-1582124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-2284129IPR009057Homeodomain-like
CDDcd001679.10E-1284127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MNRKSMSARR NGGKAQKKTN VVKGQWTLDE DRQAFFLPFL LLSLSQRYGL KKWSHIAQML  60
HGRIGKQCRE RWHNHLRPNI KKDTWCEEED KILIQAHSEI GNKWAEIAKR LPGRTENSIK  120
NHWNATKRRQ FARRRCRNTR NPKSGMLLQN YIKSLALSPA PSTRKRKPGN SSKSTVSAMP  180
AEEPSTAADA YRDGDDHLVP ACDFSDVMVS LLFQDEEKVP AEGYDVGHLF DQLGCGPGVD  240
KSLEMEMEYW DDIVATPQSY EDVKPEMDLV EMMSQNSSTS NNMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-42211312105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-42211312105C-Myb DNA-Binding Domain
1msf_C1e-42211312105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018678566.10.0PREDICTED: transcription factor MYB98-like isoform X2
SwissprotQ9S7L22e-69MYB98_ARATH; Transcription factor MYB98
TrEMBLM0SG150.0M0SG15_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P19490_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-68myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]