PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P18990_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 333aa MW: 37007.7 Da PI: 7.9586

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P18990_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.2	9.8e-51	39	163	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeelvv+yL ++++++++++ +++evd+yk++Pw+Lp +++ +e+ewyfFs+rd+ky++g+r+nra+ +gyWkatg GSMUA_Achr3P18990_001 39 LPPGFRFHPTDEELVVHYLLRRCAAQPIPV-PIVAEVDLYKYDPWQLPGMARYGEEEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGA 125 79**************************.88***********8888899***************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dk++ s + v +kk Lvfy+g+ pkgekt+W+mheyrl GSMUA_Achr3P18990_001 126 DKPIGS--PRPVAIKKALVFYSGKPPKGEKTNWIMHEYRL 163 99..779*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.11E-61	36	190	IPR003441	NAC domain
PROSITE profile	PS51005	59.783	39	190	IPR003441	NAC domain
Pfam	PF02365	2.0E-26	40	163	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MSPVSSSPSS KPFFFPVFRS YYPVAGEESE RMNGSDLVLP PGFRFHPTDE ELVVHYLLRR 60 CAAQPIPVPI VAEVDLYKYD PWQLPGMARY GEEEWYFFSP RDRKYPNGSR PNRAAGTGYW 120 KATGADKPIG SPRPVAIKKA LVFYSGKPPK GEKTNWIMHE YRLADVDRSA RKKNQSLRFD 180 DWVLCRIYHK KGAVGKQANP DRKPAGPKSQ PRPAPQPQLK QEAVSHARAP TTDMICFDSA 240 ESLPRLLGES SSSGHAPSYT SPDFACEREA ESQPRWADDG FSDWMIDLGI GFIDDAAAAS 300 AVAAAGDAFP PLSPAAAFRD SFQDVFVYLQ TPV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-74	26	192	2	170	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009393819.2	0.0	PREDICTED: NAC domain-containing protein 2-like
Swissprot	Q39013	1e-109	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	M0SFW5	0.0	M0SFW5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P18990_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3417	37	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-107	NAC family protein

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]