PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P18970_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 262aa    MW: 29851.3 Da    PI: 9.8432
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P18970_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.5e-171863147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           rg W + Ed +l ++v+q+G+++W++Ia++++ gR++k+c++rw++ 
  GSMUA_Achr3P18970_001 18 RGHWKPSEDAKLQQLVEQFGPHNWNSIAEKLQ-GRSGKSCRLRWFNQ 63
                           899*****************************.***********996 PP
2Myb_DNA-binding55.21.6e-1770113146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            r ++T+eE+e l+ a + +G++ W++Ia+ ++ gRt++++k++w+ 
  GSMUA_Achr3P18970_001  70 RSPFTAEEEEMLLAAQQVHGNK-WALIAQLFP-GRTDNSVKNHWHV 113
                            789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.9341364IPR017930Myb domain
SuperFamilySSF466898.61E-3017111IPR009057Homeodomain-like
SMARTSM007175.8E-141766IPR001005SANT/Myb domain
PfamPF002491.1E-161863IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-271971IPR009057Homeodomain-like
CDDcd001672.04E-132162No hitNo description
PROSITE profilePS5129425.05865119IPR017930Myb domain
SMARTSM007176.1E-1569117IPR001005SANT/Myb domain
PfamPF002498.8E-1570112IPR001005SANT/Myb domain
CDDcd001675.82E-1272112No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2172117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MESTATSTGS GDMKACPRGH WKPSEDAKLQ QLVEQFGPHN WNSIAEKLQG RSGKSCRLRW  60
FNQLDPRINR SPFTAEEEEM LLAAQQVHGN KWALIAQLFP GRTDNSVKNH WHVIMARRHR  120
ERLKLMRKRT DQDFTSQLPF EVGDGTNGTT TPASAFFGSR IHLVPQRFGS ERRNYSSFRC  180
SCSTLETSQL HDQSIRHRHQ TYRSLRACED GHNKRAAAPN SKFSSEYDSC VGHAIRRGDD  240
NEQNERGKNV PFIDFLGVGI TP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-30181187107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116128RRHRERLKLMRKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393822.10.0PREDICTED: myb-like protein Q isoform X1
SwissprotQ6R0C41e-62MYB52_ARATH; Transcription factor MYB52
TrEMBLM0SFW30.0M0SFW3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P18970_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.18e-62myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]