PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P18070_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 248aa MW: 28443.6 Da PI: 8.6928 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.7 | 1.1e-49 | 6 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeelv +yLk+kveg k+el evi+ + +yk++Pw+Lp +v + ew+fF++ d+ky++g+r+nrat+sgyWkatgk GSMUA_Achr3P18070_001 6 LPPGFRFHPTDEELVGYYLKRKVEGLKIEL-EVIPVISLYKFDPWELPGNVFSLLVEWFFFCSWDRKYPNGSRTNRATASGYWKATGK 92 79****************************.99***************76666667******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d+++ + + ++ gl+ktLvfy grap g++t W+mheyrl GSMUA_Achr3P18070_001 93 DRKIAC-EPSAFGLRKTLVFYLGRAPGGQRTVWIMHEYRL 131 ******.8899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-55 | 2 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.257 | 6 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-28 | 7 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MNAMLLPPGF RFHPTDEELV GYYLKRKVEG LKIELEVIPV ISLYKFDPWE LPGNVFSLLV 60 EWFFFCSWDR KYPNGSRTNR ATASGYWKAT GKDRKIACEP SAFGLRKTLV FYLGRAPGGQ 120 RTVWIMHEYR LCEDLFHGSS NFLGAFCLCR VIKRSGNWLK RSSNRQEEPK AEKYPSNMFD 180 FNRKRNIDEI FNGTEESSSL DLFDRSSGSS VINSPEIARW VEPDPIITVP SVPDASKVST 240 ALLPLWVP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 9e-53 | 1 | 157 | 15 | 171 | NAC domain-containing protein 19 |
3swm_B | 9e-53 | 1 | 157 | 15 | 171 | NAC domain-containing protein 19 |
3swm_C | 9e-53 | 1 | 157 | 15 | 171 | NAC domain-containing protein 19 |
3swm_D | 9e-53 | 1 | 157 | 15 | 171 | NAC domain-containing protein 19 |
3swp_A | 9e-53 | 1 | 157 | 15 | 171 | NAC domain-containing protein 19 |
3swp_B | 9e-53 | 1 | 157 | 15 | 171 | NAC domain-containing protein 19 |
3swp_C | 9e-53 | 1 | 157 | 15 | 171 | NAC domain-containing protein 19 |
3swp_D | 9e-53 | 1 | 157 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009393947.1 | 1e-169 | PREDICTED: NAC domain-containing protein 72-like | ||||
Swissprot | O49697 | 1e-73 | NAC71_ARATH; NAC domain-containing protein 71 | ||||
TrEMBL | M0SFM3 | 0.0 | M0SFM3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P18070_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6209 | 38 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17980.1 | 4e-76 | NAC domain containing protein 71 |
Publications ? help Back to Top | |||
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