PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P18020_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 293aa MW: 33195.5 Da PI: 8.0923 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182 | 1.5e-56 | 12 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdee++++yL++k++++++++ ++i +vd++k+ePwdLp+k++ +e+ew+fF+++d+ky+tg+r+nrat++gyWkatgk GSMUA_Achr3P18020_001 12 LPPGFRFHPTDEEVITHYLAPKATNNSFSA-RAIGDVDLNKCEPWDLPSKARMGEREWFFFCQKDRKYQTGTRTNRATEAGYWKATGK 98 79**************************99.89***************999999********************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dke+++ g lvg+kktLvfy+grapkg+kt+Wvmheyrl GSMUA_Achr3P18020_001 99 DKEIYRGIGVLVGMKKTLVFYRGRAPKGQKTSWVMHEYRL 138 ******9999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-64 | 9 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.711 | 12 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-29 | 13 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MVDVMEEGCM QLPPGFRFHP TDEEVITHYL APKATNNSFS ARAIGDVDLN KCEPWDLPSK 60 ARMGEREWFF FCQKDRKYQT GTRTNRATEA GYWKATGKDK EIYRGIGVLV GMKKTLVFYR 120 GRAPKGQKTS WVMHEYRLQG SDAPKSVEDE WVVCRVFHKN MGRRSPTPPP PPPPGIQSVK 180 TLDPPRMNFQ EHPPIISAMM GTENQQAVDH RTSSNPPHNS YCLLPESANS GYLHHQDAAQ 240 RASASSAIMR HCKMDGCWDT DLHVSWAMSK HYGDLHDPSS SAAVTDLDSI RWF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-52 | 10 | 160 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-52 | 10 | 160 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-52 | 10 | 160 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-52 | 10 | 160 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-52 | 10 | 160 | 15 | 166 | NAC domain-containing protein 19 |
4dul_B | 5e-52 | 10 | 160 | 15 | 166 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009392737.1 | 0.0 | PREDICTED: NAC domain-containing protein 92-like | ||||
Swissprot | Q9FK44 | 2e-84 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | M0SFL8 | 0.0 | M0SFL8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P18020_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 1e-86 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
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