PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P18020_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 293aa    MW: 33195.5 Da    PI: 8.0923
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P18020_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1821.5e-56121381128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtdee++++yL++k++++++++ ++i +vd++k+ePwdLp+k++ +e+ew+fF+++d+ky+tg+r+nrat++gyWkatgk
  GSMUA_Achr3P18020_001  12 LPPGFRFHPTDEEVITHYLAPKATNNSFSA-RAIGDVDLNKCEPWDLPSKARMGEREWFFFCQKDRKYQTGTRTNRATEAGYWKATGK 98 
                            79**************************99.89***************999999********************************** PP

                    NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            dke+++  g lvg+kktLvfy+grapkg+kt+Wvmheyrl
  GSMUA_Achr3P18020_001  99 DKEIYRGIGVLVGMKKTLVFYRGRAPKGQKTSWVMHEYRL 138
                            ******9999****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-649160IPR003441NAC domain
PROSITE profilePS5100559.71112159IPR003441NAC domain
PfamPF023653.4E-2913138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MVDVMEEGCM QLPPGFRFHP TDEEVITHYL APKATNNSFS ARAIGDVDLN KCEPWDLPSK  60
ARMGEREWFF FCQKDRKYQT GTRTNRATEA GYWKATGKDK EIYRGIGVLV GMKKTLVFYR  120
GRAPKGQKTS WVMHEYRLQG SDAPKSVEDE WVVCRVFHKN MGRRSPTPPP PPPPGIQSVK  180
TLDPPRMNFQ EHPPIISAMM GTENQQAVDH RTSSNPPHNS YCLLPESANS GYLHHQDAAQ  240
RASASSAIMR HCKMDGCWDT DLHVSWAMSK HYGDLHDPSS SAAVTDLDSI RWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-521016015166NO APICAL MERISTEM PROTEIN
1ut4_B5e-521016015166NO APICAL MERISTEM PROTEIN
1ut7_A5e-521016015166NO APICAL MERISTEM PROTEIN
1ut7_B5e-521016015166NO APICAL MERISTEM PROTEIN
4dul_A5e-521016015166NAC domain-containing protein 19
4dul_B5e-521016015166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392737.10.0PREDICTED: NAC domain-containing protein 92-like
SwissprotQ9FK442e-84NAC87_ARATH; NAC domain-containing protein 87
TrEMBLM0SFL80.0M0SFL8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P18020_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.21e-86Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]