PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P18010_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 368aa MW: 41991.8 Da PI: 9.3467

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P18010_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.9	2e-53	7	134	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeel+ +yL+++++++++++ +i+evdiyk++PwdLp+k++ +++ewyfFs+rd+ky++g r+nra++sgyWkatg+ GSMUA_Achr3P18010_001 7 LPPGFRFHPTDEELILHYLRNRASASPCPV-PIIAEVDIYKYDPWDLPAKAAYGDREWYFFSPRDRKYPNGFRPNRAAASGYWKATGT 93 79**************************.88***********888889****************************** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+++++ ++e vg+kk Lvfy+gr pkg+kt+W+mheyrl GSMUA_Achr3P18010_001 94 DKPIHAThGNESVGVKKALVFYRGRPPKGVKTNWIMHEYRL 134 *9867788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.09E-64	5	166	IPR003441	NAC domain
PROSITE profile	PS51005	62.249	7	166	IPR003441	NAC domain
Pfam	PF02365	2.1E-27	8	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MSNPASLPPG FRFHPTDEEL ILHYLRNRAS ASPCPVPIIA EVDIYKYDPW DLPAKAAYGD 60 REWYFFSPRD RKYPNGFRPN RAAASGYWKA TGTDKPIHAT HGNESVGVKK ALVFYRGRPP 120 KGVKTNWIMH EYRLAEAHAS NSYRPVKPSD SSMRLDDWVL CRIYKKNNHL QSVPPPMDQA 180 QIGSASSSKN SDQQSSLRPQ PSSSISDIIL ENYSVLSHLF GDLPENSPLM AQQHLPCSSS 240 RIDGNSSLLQ QQTQMDPMGD GSGKRPRTME CYFDDSNRLL HPPKKQNCSN MFANFSEHKL 300 CKAATYHGTY DHKKSDLVVQ LILHGIEISH MMQIRFKQVS SFRVILHEIE EFTKHMCSMI 360 FSMRKMMR

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MSNPASLPPG FRFHPTDEEL ILHYLRNRAS ASPCPVPIIA EVDIYKYDPW DLPAKAAYGD  60
REWYFFSPRD RKYPNGFRPN RAAASGYWKA TGTDKPIHAT HGNESVGVKK ALVFYRGRPP  120
KGVKTNWIMH EYRLAEAHAS NSYRPVKPSD SSMRLDDWVL CRIYKKNNHL QSVPPPMDQA  180
QIGSASSSKN SDQQSSLRPQ PSSSISDIIL ENYSVLSHLF GDLPENSPLM AQQHLPCSSS  240
RIDGNSSLLQ QQTQMDPMGD GSGKRPRTME CYFDDSNRLL HPPKKQNCSN MFANFSEHKL  300
CKAATYHGTY DHKKSDLVVQ LILHGIEISH MMQIRFKQVS SFRVILHEIE EFTKHMCSMI  360
FSMRKMMR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-71	6	172	14	174	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009392736.1	0.0	PREDICTED: NAC domain-containing protein 67-like
Swissprot	K4BNG7	6e-86	NAP2_SOLLC; NAC domain-containing protein 2
TrEMBL	M0SFL7	0.0	M0SFL7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P18010_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1237	36	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	4e-86	NAC domain containing protein 47

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]