PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P17900_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

S1Fa-like

Protein Properties

Length: 80aa MW: 8823.45 Da PI: 10.6272

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P17900_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	124.1	4.7e-39	15	80	6	70
S1FA 6 vea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +e+ +GlnPGl+vllvvggl+l+fl+gny+ly+yaqk+lPPr+kkP+skkk kre+lk+Gv++PGe GSMUA_Achr3P17900_001 15 EETsRGLNPGLVVLLVVGGLILLFLLGNYALYMYAQKTLPPRRKKPISKKKSKRERLKRGVSAPGE 80 4444*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	1.4E-40	15	80	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MDEQISDAAG DVIKEETSRG LNPGLVVLLV VGGLILLFLL GNYALYMYAQ KTLPPRRKKP 60 ISKKKSKRER LKRGVSAPGE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010937830.1	6e-28	DNA-binding protein S1FA
Refseq	XP_029123946.1	6e-28	DNA-binding protein S1FA
Swissprot	Q7XLX6	5e-22	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	M0SFK6	3e-49	M0SFK6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P17900_001	5e-50	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5154	35	63

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]