PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr3P17800_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 234aa MW: 25302.8 Da PI: 8.3647 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.5 | 7.8e-37 | 74 | 173 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk lrr+C+ +C lap fp +++ kf +h++FGa n++kll++lpe++r da++s+vyeA+ar+rd vyG++gvi +lq+q++ GSMUA_Achr3P17800_001 74 PCAACKSLRRRCTVSCLLAPFFPPTETLKFTTAHRVFGAGNIIKLLQDLPESRRADAVNSMVYEANARLRDRVYGCAGVICHLQKQVD 161 7*************************************************************************************** PP DUF260 89 qlkaelallkee 100 +l+++la+++++ GSMUA_Achr3P17800_001 162 ELQEQLARAQAK 173 *******99875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.631 | 73 | 174 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-38 | 74 | 171 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 234 aa Download sequence Send to blast |
MLCRRDLWHS INCNGLRSPT RSLHSLIMSS SSDTTTASAT TTILATKTTP PPFSPSLSSS 60 ANSAPPPHPT ALSPCAACKS LRRRCTVSCL LAPFFPPTET LKFTTAHRVF GAGNIIKLLQ 120 DLPESRRADA VNSMVYEANA RLRDRVYGCA GVICHLQKQV DELQEQLARA QAKHVILQAQ 180 HAQLLASTAT ARSQQQRPGE ATDGVVADSC MLQNGGYCVD DCGLGSVWEE PRWA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-36 | 64 | 167 | 1 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-36 | 64 | 167 | 1 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009392713.1 | 1e-151 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 3e-55 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | M0SFJ6 | 1e-172 | M0SFJ6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P17800_001 | 1e-173 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07900.1 | 8e-57 | LOB domain-containing protein 1 |