PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P17770_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB_related | ||||||||
Protein Properties | Length: 239aa MW: 26714.5 Da PI: 8.7569 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.7 | 1.1e-07 | 5 | 34 | 16 | 47 |
HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++G + Wk+I + +g ++t q++s+ qky GSMUA_Achr3P17770_001 5 YEKFGRD-WKKIEEFVG-TKTTIQIRSHAQKY 34 6899977.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.844 | 1 | 39 | IPR017930 | Myb domain |
CDD | cd00167 | 6.42E-4 | 2 | 35 | No hit | No description |
SuperFamily | SSF46689 | 1.05E-8 | 4 | 40 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-5 | 5 | 34 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 9.3E-9 | 6 | 37 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MIYGYEKFGR DWKKIEEFVG TKTTIQIRSH AQKYFLKVQK IGLAAHVPPP HPKRKMAHPT 60 QQINPNNAIV SVDCLYASSR ILPACSVWDN TSNDVNYTPS EATSLPACYT ISPDIEGDSG 120 IFGKTSIYSQ NIDWSGNLSG SLLTHRATKQ RNPHPDFAQV YTFIGSMFDP NITWRAEHFF 180 EKLQDVDPVT AKIILILMRN LAVNLTSPSL EPLIRWLGTY DVNTRKVAAI GGTAAFADI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009392744.1 | 1e-174 | PREDICTED: protein REVEILLE 8-like isoform X1 | ||||
TrEMBL | M0SFJ3 | 1e-179 | M0SFJ3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P17770_001 | 1e-180 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1096 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.1 | 3e-52 | MYB_related family protein |