PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P17620_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 564aa    MW: 62866.1 Da    PI: 6.5102
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P17620_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13410456455
                            HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            +h  +ErrRR+++N++f  Lr+l+P  +       ++Ka+iL  ++eY+k+L+
  GSMUA_Achr3P17620_001 410 NHVLAERRRREKLNERFMILRSLVPFeL------QMDKASILGDTIEYVKQLR 456
                            7999**********************55......8****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.8E-579191IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.66406455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-17408469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-17410476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.27E-14410460No hitNo description
PfamPF000105.0E-11410455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-16412461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MVTPPSTSLQ QTLQAVVQSV RWTYSLFWQP CPQQGILVWG DGYYNGSIKT RKTVQPVEVS  60
TEEASLQRSQ QLRELYESLS SGEANLPARR PCAALSPEDL TEAEWFYLMC ISFSFPPGVG  120
LPGKAFARQR HVWLTRANEV DSKVFSRAIL AKSAHIQTVA CIPLVDGVLE LGNIEKVEED  180
MALIQRAKRH FMDYFDAHTK PALSEHSTSN PFARADHHHP LVDVSVPPGL TVAAAETIPA  240
AEASELMQLE MSEDIRVGSI SDCSNNLDPE QMPAAQSICK NWNCLLEDLG NGFQQPLGTQ  300
EQDLSPEDAH YSETVSSVLR HNLKRWVGSS PFGDVIQSQK SAFSRWSSER DRLPVCSRGS  360
CISQWLLKSV VLNIRDLHCK LSDGSSPKST DGEGGNRFQK GAAQEEISAN HVLAERRRRE  420
KLNERFMILR SLVPFELQMD KASILGDTIE YVKQLRKRIQ DLEARNRQSD RRLKAMEGSN  480
GVGVHASVVE EDALLELQCT HRDGLLLKVL QGLHELGLEV SSVHFSASNA VCNAELRAKV  540
KEVHGKRVNI ADVKKTIDQI FSDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-2381918192Transcription factor MYC3
4rqw_B3e-2381918192Transcription factor MYC3
4rs9_A3e-2381918192Transcription factor MYC3
4yz6_A3e-2381918192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1414419ERRRRE
2415420RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392688.10.0PREDICTED: basic helix-loop-helix protein A-like
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLM0SFH80.0M0SFH8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P17620_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88633036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.13e-95bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]