PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P17400_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 58aa MW: 6485.48 Da PI: 8.2639 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 27.5 | 8.7e-09 | 32 | 55 | 1 | 24 |
NAM 1 lppGfrFhPtdeelvveyLkkkve 24 lppGfrF P+deel+v++L +k++ GSMUA_Achr3P17400_001 32 LPPGFRFFPSDEELIVHFLYRKAA 55 79*******************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.29E-10 | 23 | 54 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 13.457 | 32 | 58 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-5 | 33 | 54 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 58 aa Download sequence Send to blast |
MHELLRGRSS SSFFHIHSPV SFCSMGGGTA NLPPGFRFFP SDEELIVHFL YRKAAVLC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M0SFF6 | 2e-34 | M0SFF6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P17400_001 | 3e-35 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 3e-13 | xylem NAC domain 1 |