PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P17390_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 172aa MW: 19937.1 Da PI: 10.6077 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 24.3 | 8.4e-08 | 51 | 93 | 86 | 128 |
NAM 86 tgkdkevlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128 dk +++ ++++ +kktL +y g+ p+g kt+ vmh y+l GSMUA_Achr3P17390_001 51 NRADKIITC-SSKDAAMKKTLRYYyIGQPPEGIKTNRVMHRYHL 93 444555555.9999*******998679***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-10 | 28 | 99 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MCPIVPKWFA YILSSCFTFQ FRYIGLCPSF LGKALQGGDR FWCFFTRRKQ NRADKIITCS 60 SKDAAMKKTL RYYYIGQPPE GIKTNRVMHR YHLLDGILGS SPSGGSSSST STRGKRRRAV 120 CTYYYHELNR WVIRRVHEST SSSQASFRGS KRYSYPWMIS MKYACQIKTA IP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009404854.1 | 8e-25 | PREDICTED: NAC domain-containing protein 104-like isoform X1 | ||||
TrEMBL | M0SFF5 | 1e-125 | M0SFF5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P17390_001 | 1e-126 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.3 | 2e-09 | NAC family protein |